Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04597 and MPMX19_04598 are separated by 86 nucleotides MPMX19_04598 and MPMX19_04599 overlap by 4 nucleotides MPMX19_04599 and MPMX19_04600 are separated by 116 nucleotides
MPMX19_04597: MPMX19_04597 - Adaptive-response sensory-kinase SasA, at 981,017 to 982,657
_04597
MPMX19_04598: MPMX19_04598 - putative ABC transporter ATP-binding protein YadG, at 982,744 to 983,670
_04598
MPMX19_04599: MPMX19_04599 - Inner membrane transport permease YadH, at 983,667 to 984,428
_04599
MPMX19_04600: MPMX19_04600 - hypothetical protein, at 984,545 to 984,994
_04600
Position (kb) 982
983
984 Strain fitness (log2 ratio) -2
-1
0
1
2 at 981.770 kb on + strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 982.013 kb on + strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.102 kb on + strand, within MPMX19_04597 at 982.102 kb on + strand, within MPMX19_04597 at 982.103 kb on - strand, within MPMX19_04597 at 982.103 kb on - strand, within MPMX19_04597 at 982.103 kb on - strand, within MPMX19_04597 at 982.291 kb on + strand, within MPMX19_04597 at 982.291 kb on + strand, within MPMX19_04597 at 982.291 kb on + strand, within MPMX19_04597 at 982.292 kb on - strand, within MPMX19_04597 at 982.645 kb on - strand at 982.645 kb on - strand at 982.683 kb on + strand at 982.684 kb on - strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.743 kb on + strand at 982.744 kb on - strand at 982.752 kb on + strand at 982.752 kb on + strand at 982.752 kb on + strand at 982.755 kb on - strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.783 kb on + strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 982.784 kb on - strand at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.320 kb on + strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.321 kb on - strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.322 kb on + strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.323 kb on - strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.524 kb on + strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.525 kb on - strand, within MPMX19_04598 at 983.599 kb on + strand at 983.599 kb on + strand at 983.599 kb on + strand at 983.600 kb on - strand at 983.600 kb on - strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.694 kb on + strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.695 kb on - strand at 983.769 kb on + strand, within MPMX19_04599 at 983.769 kb on + strand, within MPMX19_04599 at 983.769 kb on + strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.770 kb on - strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.829 kb on + strand, within MPMX19_04599 at 983.830 kb on - strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.884 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.907 kb on + strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.908 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.920 kb on - strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.934 kb on + strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.935 kb on - strand, within MPMX19_04599 at 983.982 kb on + strand, within MPMX19_04599 at 983.983 kb on - strand, within MPMX19_04599 at 984.222 kb on + strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.223 kb on - strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.282 kb on + strand, within MPMX19_04599 at 984.283 kb on - strand, within MPMX19_04599 at 984.313 kb on - strand, within MPMX19_04599 at 984.313 kb on - strand, within MPMX19_04599 at 984.412 kb on - strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.534 kb on + strand at 984.535 kb on - strand at 984.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 981,770 + MPMX19_04597 0.46 -0.6 981,771 - MPMX19_04597 0.46 -0.5 981,771 - MPMX19_04597 0.46 -2.1 982,013 + MPMX19_04597 0.61 -0.2 982,014 - MPMX19_04597 0.61 -0.5 982,014 - MPMX19_04597 0.61 -0.6 982,014 - MPMX19_04597 0.61 +1.1 982,014 - MPMX19_04597 0.61 -0.7 982,014 - MPMX19_04597 0.61 -1.3 982,014 - MPMX19_04597 0.61 -0.3 982,014 - MPMX19_04597 0.61 +1.0 982,014 - MPMX19_04597 0.61 -2.2 982,102 + MPMX19_04597 0.66 +0.8 982,102 + MPMX19_04597 0.66 +0.2 982,103 - MPMX19_04597 0.66 +2.0 982,103 - MPMX19_04597 0.66 +0.1 982,103 - MPMX19_04597 0.66 -0.4 982,291 + MPMX19_04597 0.78 -0.2 982,291 + MPMX19_04597 0.78 +2.4 982,291 + MPMX19_04597 0.78 -0.2 982,292 - MPMX19_04597 0.78 +0.3 982,645 - -1.4 982,645 - +0.3 982,683 + -0.5 982,684 - -0.5 982,743 + -0.5 982,743 + +0.2 982,743 + -0.5 982,743 + -2.2 982,743 + +0.1 982,743 + +0.2 982,744 - +0.3 982,752 + -0.4 982,752 + +0.7 982,752 + +0.3 982,755 - -1.9 982,783 + -1.3 982,783 + +0.6 982,783 + -1.2 982,783 + -0.1 982,783 + -0.3 982,783 + +0.3 982,783 + -0.1 982,783 + +0.2 982,783 + +0.1 982,783 + +0.8 982,783 + +0.9 982,784 - -1.9 982,784 - -0.3 982,784 - -0.7 982,784 - -1.8 982,784 - +0.5 982,784 - -1.9 982,784 - +0.6 982,784 - -0.8 982,784 - -0.5 982,784 - +0.1 982,784 - -0.2 982,784 - +1.2 982,784 - +0.7 982,784 - -0.1 982,784 - -1.3 982,784 - -0.8 982,784 - -0.3 982,784 - -1.0 982,784 - -2.0 982,784 - +0.9 983,320 + MPMX19_04598 0.62 -0.5 983,320 + MPMX19_04598 0.62 +0.2 983,320 + MPMX19_04598 0.62 +0.6 983,320 + MPMX19_04598 0.62 +1.0 983,320 + MPMX19_04598 0.62 +0.4 983,320 + MPMX19_04598 0.62 +0.5 983,320 + MPMX19_04598 0.62 +1.3 983,321 - MPMX19_04598 0.62 -1.0 983,321 - MPMX19_04598 0.62 -1.2 983,321 - MPMX19_04598 0.62 -0.9 983,321 - MPMX19_04598 0.62 +0.7 983,321 - MPMX19_04598 0.62 +0.9 983,321 - MPMX19_04598 0.62 +0.1 983,321 - MPMX19_04598 0.62 +0.1 983,321 - MPMX19_04598 0.62 -0.4 983,321 - MPMX19_04598 0.62 -0.9 983,321 - MPMX19_04598 0.62 -0.4 983,321 - MPMX19_04598 0.62 +0.5 983,321 - MPMX19_04598 0.62 +0.6 983,321 - MPMX19_04598 0.62 +0.6 983,321 - MPMX19_04598 0.62 +0.8 983,321 - MPMX19_04598 0.62 -0.2 983,321 - MPMX19_04598 0.62 -0.3 983,321 - MPMX19_04598 0.62 -0.2 983,321 - MPMX19_04598 0.62 +0.7 983,321 - MPMX19_04598 0.62 -1.0 983,322 + MPMX19_04598 0.62 +0.0 983,322 + MPMX19_04598 0.62 -1.1 983,322 + MPMX19_04598 0.62 -0.2 983,322 + MPMX19_04598 0.62 +0.7 983,322 + MPMX19_04598 0.62 +0.0 983,322 + MPMX19_04598 0.62 +0.9 983,323 - MPMX19_04598 0.62 +0.3 983,323 - MPMX19_04598 0.62 -0.7 983,323 - MPMX19_04598 0.62 +0.6 983,323 - MPMX19_04598 0.62 -0.8 983,323 - MPMX19_04598 0.62 -0.7 983,524 + MPMX19_04598 0.84 +0.2 983,524 + MPMX19_04598 0.84 +0.7 983,524 + MPMX19_04598 0.84 -0.8 983,524 + MPMX19_04598 0.84 -0.5 983,524 + MPMX19_04598 0.84 -1.9 983,524 + MPMX19_04598 0.84 +0.3 983,525 - MPMX19_04598 0.84 -0.4 983,525 - MPMX19_04598 0.84 -0.0 983,525 - MPMX19_04598 0.84 -0.6 983,599 + -0.4 983,599 + -1.1 983,599 + -0.6 983,600 - -0.7 983,600 - -1.3 983,694 + -1.3 983,694 + -1.2 983,694 + -1.0 983,694 + -0.0 983,694 + +0.0 983,694 + +0.5 983,694 + -0.6 983,694 + -1.6 983,694 + +0.7 983,694 + +0.2 983,694 + +0.4 983,694 + -0.4 983,694 + -2.2 983,694 + -1.2 983,694 + -0.6 983,694 + -1.2 983,694 + -0.1 983,694 + -0.9 983,694 + -0.6 983,694 + +0.1 983,695 - +0.0 983,695 - -0.1 983,695 - -0.6 983,695 - -1.2 983,695 - -0.7 983,695 - +0.3 983,695 - -1.1 983,769 + MPMX19_04599 0.13 -0.9 983,769 + MPMX19_04599 0.13 -0.6 983,769 + MPMX19_04599 0.13 -2.2 983,770 - MPMX19_04599 0.14 -0.7 983,770 - MPMX19_04599 0.14 +1.3 983,770 - MPMX19_04599 0.14 -0.7 983,770 - MPMX19_04599 0.14 -1.3 983,829 + MPMX19_04599 0.21 -1.3 983,829 + MPMX19_04599 0.21 +0.5 983,829 + MPMX19_04599 0.21 -0.6 983,830 - MPMX19_04599 0.21 -0.0 983,884 + MPMX19_04599 0.28 -1.2 983,884 + MPMX19_04599 0.28 +0.6 983,884 + MPMX19_04599 0.28 +0.6 983,907 + MPMX19_04599 0.31 -0.9 983,907 + MPMX19_04599 0.31 -1.6 983,907 + MPMX19_04599 0.31 +0.4 983,907 + MPMX19_04599 0.31 -2.3 983,907 + MPMX19_04599 0.31 +0.9 983,907 + MPMX19_04599 0.31 +0.0 983,907 + MPMX19_04599 0.31 -1.8 983,907 + MPMX19_04599 0.31 +1.2 983,907 + MPMX19_04599 0.31 +0.0 983,907 + MPMX19_04599 0.31 +1.3 983,907 + MPMX19_04599 0.31 -0.6 983,907 + MPMX19_04599 0.31 -1.3 983,907 + MPMX19_04599 0.31 -0.3 983,908 - MPMX19_04599 0.32 -0.2 983,908 - MPMX19_04599 0.32 -0.5 983,908 - MPMX19_04599 0.32 +0.4 983,908 - MPMX19_04599 0.32 -0.5 983,908 - MPMX19_04599 0.32 -0.1 983,908 - MPMX19_04599 0.32 -2.5 983,920 - MPMX19_04599 0.33 -1.6 983,920 - MPMX19_04599 0.33 -0.1 983,920 - MPMX19_04599 0.33 -0.8 983,934 + MPMX19_04599 0.35 +0.6 983,934 + MPMX19_04599 0.35 -0.2 983,934 + MPMX19_04599 0.35 -0.6 983,934 + MPMX19_04599 0.35 +0.8 983,934 + MPMX19_04599 0.35 -1.4 983,935 - MPMX19_04599 0.35 -0.2 983,935 - MPMX19_04599 0.35 -1.0 983,935 - MPMX19_04599 0.35 -1.7 983,935 - MPMX19_04599 0.35 -1.0 983,935 - MPMX19_04599 0.35 +0.2 983,935 - MPMX19_04599 0.35 +0.6 983,935 - MPMX19_04599 0.35 -1.6 983,982 + MPMX19_04599 0.41 +1.2 983,983 - MPMX19_04599 0.41 +0.2 984,222 + MPMX19_04599 0.73 -1.9 984,223 - MPMX19_04599 0.73 -2.1 984,223 - MPMX19_04599 0.73 +0.6 984,223 - MPMX19_04599 0.73 -1.5 984,223 - MPMX19_04599 0.73 -1.6 984,282 + MPMX19_04599 0.81 -1.6 984,282 + MPMX19_04599 0.81 -1.7 984,282 + MPMX19_04599 0.81 +0.1 984,282 + MPMX19_04599 0.81 +0.2 984,282 + MPMX19_04599 0.81 +0.8 984,282 + MPMX19_04599 0.81 -0.8 984,283 - MPMX19_04599 0.81 -2.2 984,313 - MPMX19_04599 0.85 +2.3 984,313 - MPMX19_04599 0.85 -0.2 984,412 - +1.1 984,534 + -0.7 984,534 + +0.3 984,534 + +0.6 984,534 + +0.6 984,534 + +0.1 984,535 - +0.6 984,535 - -0.1
Or see this region's nucleotide sequence