Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04527 and MPMX19_04528 are separated by 97 nucleotides MPMX19_04528 and MPMX19_04529 are separated by 108 nucleotides MPMX19_04529 and MPMX19_04530 are separated by 41 nucleotides
MPMX19_04527: MPMX19_04527 - IS5 family transposase IS4811, at 900,342 to 901,292
_04527
MPMX19_04528: MPMX19_04528 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 901,390 to 902,139
_04528
MPMX19_04529: MPMX19_04529 - hypothetical protein, at 902,248 to 902,730
_04529
MPMX19_04530: MPMX19_04530 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 902,772 to 903,656
_04530
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 900.397 kb on + strand at 900.397 kb on + strand at 900.397 kb on + strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.398 kb on - strand at 900.461 kb on - strand, within MPMX19_04527 at 900.507 kb on + strand, within MPMX19_04527 at 900.508 kb on - strand, within MPMX19_04527 at 900.547 kb on + strand, within MPMX19_04527 at 900.547 kb on + strand, within MPMX19_04527 at 900.547 kb on + strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.548 kb on - strand, within MPMX19_04527 at 900.756 kb on + strand, within MPMX19_04527 at 900.756 kb on + strand, within MPMX19_04527 at 900.756 kb on + strand, within MPMX19_04527 at 901.171 kb on + strand, within MPMX19_04527 at 901.171 kb on + strand, within MPMX19_04527 at 901.171 kb on + strand, within MPMX19_04527 at 901.171 kb on + strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.172 kb on - strand, within MPMX19_04527 at 901.331 kb on + strand at 901.331 kb on + strand at 901.332 kb on - strand at 901.333 kb on + strand at 901.334 kb on - strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.354 kb on + strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.355 kb on - strand at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.837 kb on + strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.838 kb on - strand, within MPMX19_04528 at 901.969 kb on + strand, within MPMX19_04528 at 901.969 kb on + strand, within MPMX19_04528 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.485 kb on + strand, within MPMX19_04529 at 902.486 kb on - strand, within MPMX19_04529 at 902.486 kb on - strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.509 kb on + strand, within MPMX19_04529 at 902.510 kb on - strand, within MPMX19_04529 at 902.510 kb on - strand, within MPMX19_04529 at 902.510 kb on - strand, within MPMX19_04529 at 902.510 kb on - strand, within MPMX19_04529 at 902.617 kb on + strand, within MPMX19_04529 at 902.617 kb on + strand, within MPMX19_04529 at 902.617 kb on + strand, within MPMX19_04529 at 902.617 kb on + strand, within MPMX19_04529 at 902.618 kb on - strand, within MPMX19_04529 at 902.618 kb on - strand, within MPMX19_04529 at 902.618 kb on - strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.629 kb on + strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.630 kb on - strand, within MPMX19_04529 at 902.877 kb on + strand, within MPMX19_04530 at 902.878 kb on - strand, within MPMX19_04530 at 902.878 kb on - strand, within MPMX19_04530 at 903.047 kb on + strand, within MPMX19_04530 at 903.048 kb on - strand, within MPMX19_04530 at 903.073 kb on + strand, within MPMX19_04530 at 903.073 kb on + strand, within MPMX19_04530 at 903.073 kb on + strand, within MPMX19_04530 at 903.073 kb on + strand, within MPMX19_04530 at 903.073 kb on + strand, within MPMX19_04530 at 903.074 kb on - strand, within MPMX19_04530 at 903.074 kb on - strand, within MPMX19_04530 at 903.074 kb on - strand, within MPMX19_04530 at 903.136 kb on + strand, within MPMX19_04530 at 903.137 kb on - strand, within MPMX19_04530 at 903.137 kb on - strand, within MPMX19_04530
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 900,397 + -1.1 900,397 + -0.5 900,397 + -1.6 900,398 - +0.0 900,398 - +0.2 900,398 - -1.2 900,398 - +0.6 900,398 - -0.6 900,398 - -1.0 900,398 - +0.4 900,461 - MPMX19_04527 0.13 -0.1 900,507 + MPMX19_04527 0.17 -0.1 900,508 - MPMX19_04527 0.17 +1.6 900,547 + MPMX19_04527 0.22 -0.5 900,547 + MPMX19_04527 0.22 +0.7 900,547 + MPMX19_04527 0.22 -0.8 900,548 - MPMX19_04527 0.22 +0.0 900,548 - MPMX19_04527 0.22 -0.3 900,548 - MPMX19_04527 0.22 -0.3 900,548 - MPMX19_04527 0.22 +0.6 900,548 - MPMX19_04527 0.22 -0.8 900,548 - MPMX19_04527 0.22 -0.3 900,548 - MPMX19_04527 0.22 -0.2 900,548 - MPMX19_04527 0.22 -0.7 900,756 + MPMX19_04527 0.44 +0.6 900,756 + MPMX19_04527 0.44 +1.0 900,756 + MPMX19_04527 0.44 +0.2 901,171 + MPMX19_04527 0.87 -1.9 901,171 + MPMX19_04527 0.87 +0.4 901,171 + MPMX19_04527 0.87 -1.7 901,171 + MPMX19_04527 0.87 -0.2 901,172 - MPMX19_04527 0.87 +0.0 901,172 - MPMX19_04527 0.87 -3.0 901,172 - MPMX19_04527 0.87 +0.1 901,172 - MPMX19_04527 0.87 -0.7 901,172 - MPMX19_04527 0.87 -1.4 901,172 - MPMX19_04527 0.87 +0.1 901,172 - MPMX19_04527 0.87 +0.2 901,331 + +0.9 901,331 + -0.3 901,332 - +2.0 901,333 + -1.6 901,334 - +0.4 901,354 + -1.9 901,354 + -2.0 901,354 + -0.5 901,354 + -0.9 901,354 + +0.1 901,354 + -1.2 901,354 + -0.1 901,355 - +0.0 901,355 - +0.0 901,355 - -0.9 901,355 - -0.4 901,355 - -0.5 901,355 - -1.4 901,355 - -0.6 901,355 - +0.4 901,837 + MPMX19_04528 0.60 -1.2 901,837 + MPMX19_04528 0.60 -3.0 901,837 + MPMX19_04528 0.60 -0.7 901,837 + MPMX19_04528 0.60 +0.4 901,837 + MPMX19_04528 0.60 -0.4 901,837 + MPMX19_04528 0.60 +0.0 901,837 + MPMX19_04528 0.60 -0.2 901,837 + MPMX19_04528 0.60 +0.0 901,837 + MPMX19_04528 0.60 -0.2 901,837 + MPMX19_04528 0.60 -0.2 901,837 + MPMX19_04528 0.60 +0.0 901,837 + MPMX19_04528 0.60 -0.8 901,838 - MPMX19_04528 0.60 -0.5 901,838 - MPMX19_04528 0.60 -0.9 901,838 - MPMX19_04528 0.60 -2.6 901,838 - MPMX19_04528 0.60 +0.9 901,838 - MPMX19_04528 0.60 -1.7 901,838 - MPMX19_04528 0.60 -1.1 901,838 - MPMX19_04528 0.60 -2.1 901,969 + MPMX19_04528 0.77 +0.0 901,969 + MPMX19_04528 0.77 -0.9 902,485 + MPMX19_04529 0.49 -0.1 902,485 + MPMX19_04529 0.49 -0.1 902,485 + MPMX19_04529 0.49 +0.1 902,485 + MPMX19_04529 0.49 -0.7 902,485 + MPMX19_04529 0.49 -0.6 902,485 + MPMX19_04529 0.49 +0.3 902,485 + MPMX19_04529 0.49 +0.6 902,486 - MPMX19_04529 0.49 -0.3 902,486 - MPMX19_04529 0.49 -1.9 902,509 + MPMX19_04529 0.54 +0.6 902,509 + MPMX19_04529 0.54 -0.0 902,509 + MPMX19_04529 0.54 -0.2 902,509 + MPMX19_04529 0.54 -0.6 902,509 + MPMX19_04529 0.54 +0.3 902,509 + MPMX19_04529 0.54 -1.6 902,510 - MPMX19_04529 0.54 +0.5 902,510 - MPMX19_04529 0.54 +1.0 902,510 - MPMX19_04529 0.54 -1.0 902,510 - MPMX19_04529 0.54 -0.6 902,617 + MPMX19_04529 0.76 -0.1 902,617 + MPMX19_04529 0.76 +0.3 902,617 + MPMX19_04529 0.76 -0.7 902,617 + MPMX19_04529 0.76 +0.9 902,618 - MPMX19_04529 0.77 -0.9 902,618 - MPMX19_04529 0.77 -1.2 902,618 - MPMX19_04529 0.77 -0.6 902,629 + MPMX19_04529 0.79 -1.7 902,629 + MPMX19_04529 0.79 +0.0 902,629 + MPMX19_04529 0.79 +0.1 902,629 + MPMX19_04529 0.79 +0.6 902,629 + MPMX19_04529 0.79 -0.2 902,629 + MPMX19_04529 0.79 +0.6 902,629 + MPMX19_04529 0.79 -0.2 902,629 + MPMX19_04529 0.79 -0.7 902,629 + MPMX19_04529 0.79 -1.3 902,630 - MPMX19_04529 0.79 +0.1 902,630 - MPMX19_04529 0.79 -0.1 902,630 - MPMX19_04529 0.79 -0.2 902,630 - MPMX19_04529 0.79 -2.1 902,630 - MPMX19_04529 0.79 -2.3 902,630 - MPMX19_04529 0.79 +0.1 902,630 - MPMX19_04529 0.79 +0.3 902,630 - MPMX19_04529 0.79 -1.3 902,630 - MPMX19_04529 0.79 +0.4 902,630 - MPMX19_04529 0.79 -0.8 902,630 - MPMX19_04529 0.79 -0.8 902,630 - MPMX19_04529 0.79 +0.1 902,630 - MPMX19_04529 0.79 -0.3 902,630 - MPMX19_04529 0.79 +1.2 902,630 - MPMX19_04529 0.79 +0.2 902,877 + MPMX19_04530 0.12 -0.9 902,878 - MPMX19_04530 0.12 -1.4 902,878 - MPMX19_04530 0.12 -0.4 903,047 + MPMX19_04530 0.31 -1.5 903,048 - MPMX19_04530 0.31 -1.0 903,073 + MPMX19_04530 0.34 -0.2 903,073 + MPMX19_04530 0.34 +0.9 903,073 + MPMX19_04530 0.34 -1.3 903,073 + MPMX19_04530 0.34 -0.8 903,073 + MPMX19_04530 0.34 +0.5 903,074 - MPMX19_04530 0.34 -0.3 903,074 - MPMX19_04530 0.34 -0.5 903,074 - MPMX19_04530 0.34 +1.4 903,136 + MPMX19_04530 0.41 -1.6 903,137 - MPMX19_04530 0.41 -0.8 903,137 - MPMX19_04530 0.41 -1.2
Or see this region's nucleotide sequence