Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04456 and MPMX19_04457 are separated by 61 nucleotides MPMX19_04457 and MPMX19_04458 overlap by 4 nucleotides MPMX19_04458 and MPMX19_04459 are separated by 154 nucleotides
MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755
_04456
MPMX19_04457: MPMX19_04457 - Pyruvate, phosphate dikinase, at 823,817 to 825,532
_04457
MPMX19_04458: MPMX19_04458 - 2-hydroxy-3-oxopropionate reductase, at 825,529 to 826,107
_04458
MPMX19_04459: MPMX19_04459 - hypothetical protein, at 826,262 to 827,056
_04459
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.012 kb on + strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.013 kb on - strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.051 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.393 kb on + strand, within MPMX19_04456 at 823.394 kb on - strand, within MPMX19_04456 at 823.462 kb on + strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.463 kb on - strand, within MPMX19_04456 at 823.693 kb on + strand at 823.693 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.734 kb on + strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.735 kb on - strand at 823.753 kb on + strand at 823.754 kb on - strand at 824.455 kb on + strand, within MPMX19_04457 at 824.455 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.523 kb on + strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 824.524 kb on - strand, within MPMX19_04457 at 825.060 kb on + strand, within MPMX19_04457 at 825.060 kb on + strand, within MPMX19_04457 at 825.060 kb on + strand, within MPMX19_04457 at 825.060 kb on + strand, within MPMX19_04457 at 825.060 kb on + strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.061 kb on - strand, within MPMX19_04457 at 825.687 kb on + strand, within MPMX19_04458 at 825.688 kb on - strand, within MPMX19_04458 at 825.762 kb on + strand, within MPMX19_04458 at 825.763 kb on - strand, within MPMX19_04458 at 825.763 kb on - strand, within MPMX19_04458 at 825.763 kb on - strand, within MPMX19_04458 at 825.763 kb on - strand, within MPMX19_04458 at 825.763 kb on - strand, within MPMX19_04458 at 826.208 kb on + strand at 826.257 kb on + strand at 826.274 kb on - strand at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459 at 826.477 kb on - strand, within MPMX19_04459
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 823,012 + MPMX19_04456 0.20 +0.6 823,012 + MPMX19_04456 0.20 -1.3 823,012 + MPMX19_04456 0.20 +1.2 823,012 + MPMX19_04456 0.20 +0.0 823,012 + MPMX19_04456 0.20 +0.0 823,012 + MPMX19_04456 0.20 +0.4 823,012 + MPMX19_04456 0.20 -2.5 823,012 + MPMX19_04456 0.20 -0.5 823,012 + MPMX19_04456 0.20 -0.1 823,012 + MPMX19_04456 0.20 -0.6 823,013 - MPMX19_04456 0.20 -1.3 823,013 - MPMX19_04456 0.20 +0.0 823,013 - MPMX19_04456 0.20 +0.2 823,013 - MPMX19_04456 0.20 +0.2 823,013 - MPMX19_04456 0.20 +0.2 823,013 - MPMX19_04456 0.20 -0.4 823,013 - MPMX19_04456 0.20 +0.3 823,013 - MPMX19_04456 0.20 -2.9 823,013 - MPMX19_04456 0.20 -1.7 823,013 - MPMX19_04456 0.20 -0.4 823,013 - MPMX19_04456 0.20 -1.2 823,013 - MPMX19_04456 0.20 -0.9 823,051 + MPMX19_04456 0.24 -0.0 823,051 + MPMX19_04456 0.24 +0.9 823,393 + MPMX19_04456 0.61 -0.4 823,393 + MPMX19_04456 0.61 +0.4 823,393 + MPMX19_04456 0.61 +0.2 823,394 - MPMX19_04456 0.61 -2.3 823,462 + MPMX19_04456 0.68 -1.1 823,463 - MPMX19_04456 0.68 -0.1 823,463 - MPMX19_04456 0.68 -0.9 823,463 - MPMX19_04456 0.68 +0.4 823,463 - MPMX19_04456 0.68 -2.5 823,463 - MPMX19_04456 0.68 -0.7 823,463 - MPMX19_04456 0.68 +0.0 823,693 + +0.2 823,693 + -0.4 823,734 + -1.4 823,734 + +0.1 823,734 + -0.6 823,734 + -1.0 823,735 - -0.4 823,735 - +0.3 823,735 - -1.3 823,735 - -1.2 823,735 - -0.4 823,735 - +1.8 823,735 - -0.3 823,753 + +0.3 823,754 - -1.5 824,455 + MPMX19_04457 0.37 -1.4 824,455 + MPMX19_04457 0.37 -1.9 824,523 + MPMX19_04457 0.41 -1.3 824,523 + MPMX19_04457 0.41 -1.7 824,523 + MPMX19_04457 0.41 -1.7 824,523 + MPMX19_04457 0.41 -1.0 824,524 - MPMX19_04457 0.41 -1.9 824,524 - MPMX19_04457 0.41 -0.6 824,524 - MPMX19_04457 0.41 -1.4 824,524 - MPMX19_04457 0.41 -0.1 824,524 - MPMX19_04457 0.41 -0.4 825,060 + MPMX19_04457 0.72 +2.0 825,060 + MPMX19_04457 0.72 -1.6 825,060 + MPMX19_04457 0.72 +0.9 825,060 + MPMX19_04457 0.72 -1.6 825,060 + MPMX19_04457 0.72 -0.4 825,061 - MPMX19_04457 0.72 +1.0 825,061 - MPMX19_04457 0.72 -2.4 825,061 - MPMX19_04457 0.72 +0.4 825,061 - MPMX19_04457 0.72 -2.5 825,061 - MPMX19_04457 0.72 -0.2 825,061 - MPMX19_04457 0.72 -0.0 825,687 + MPMX19_04458 0.27 +0.5 825,688 - MPMX19_04458 0.27 -1.6 825,762 + MPMX19_04458 0.40 -2.1 825,763 - MPMX19_04458 0.40 -1.9 825,763 - MPMX19_04458 0.40 -1.4 825,763 - MPMX19_04458 0.40 -0.0 825,763 - MPMX19_04458 0.40 -0.3 825,763 - MPMX19_04458 0.40 -0.4 826,208 + +0.2 826,257 + +0.9 826,274 - -1.2 826,477 - MPMX19_04459 0.27 -1.7 826,477 - MPMX19_04459 0.27 +0.1 826,477 - MPMX19_04459 0.27 +0.3 826,477 - MPMX19_04459 0.27 +0.0 826,477 - MPMX19_04459 0.27 +0.4 826,477 - MPMX19_04459 0.27 +0.2
Or see this region's nucleotide sequence