Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04207 and MPMX19_04208 are separated by 142 nucleotides MPMX19_04208 and MPMX19_04209 overlap by 4 nucleotides
MPMX19_04207: MPMX19_04207 - hypothetical protein, at 540,411 to 542,273
_04207
MPMX19_04208: MPMX19_04208 - flagellum biosynthesis repressor protein FlbT, at 542,416 to 542,862
_04208
MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912
_04209
Position (kb) 542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.279 kb on - strand at 542.279 kb on - strand at 542.303 kb on - strand at 542.411 kb on + strand at 542.411 kb on + strand at 542.509 kb on + strand, within MPMX19_04208 at 542.510 kb on - strand, within MPMX19_04208 at 542.584 kb on + strand, within MPMX19_04208 at 542.605 kb on + strand, within MPMX19_04208 at 542.606 kb on - strand, within MPMX19_04208 at 542.734 kb on + strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.802 kb on + strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.079 kb on - strand at 543.079 kb on - strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.241 kb on - strand at 543.241 kb on - strand at 543.291 kb on + strand at 543.291 kb on + strand at 543.292 kb on - strand at 543.292 kb on - strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.345 kb on + strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.346 kb on - strand at 543.410 kb on + strand at 543.410 kb on + strand at 543.411 kb on - strand at 543.411 kb on - strand at 543.411 kb on - strand at 543.473 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209 at 543.594 kb on + strand, within MPMX19_04209
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 542,271 + -1.1 542,271 + -0.5 542,271 + +0.3 542,271 + -0.8 542,271 + -0.8 542,271 + -0.6 542,278 + -1.3 542,278 + -1.2 542,278 + -0.4 542,278 + +0.2 542,278 + +0.5 542,278 + -0.3 542,279 - +1.9 542,279 - -1.0 542,303 - -1.4 542,411 + -0.7 542,411 + -1.0 542,509 + MPMX19_04208 0.21 -0.6 542,510 - MPMX19_04208 0.21 -1.3 542,584 + MPMX19_04208 0.38 -2.1 542,605 + MPMX19_04208 0.42 -0.3 542,606 - MPMX19_04208 0.43 -1.6 542,734 + MPMX19_04208 0.71 -1.6 542,735 - MPMX19_04208 0.71 -1.9 542,735 - MPMX19_04208 0.71 -1.2 542,735 - MPMX19_04208 0.71 -1.7 542,735 - MPMX19_04208 0.71 -2.4 542,735 - MPMX19_04208 0.71 +1.6 542,802 + MPMX19_04208 0.86 -1.7 542,803 - MPMX19_04208 0.87 -1.4 542,803 - MPMX19_04208 0.87 -1.0 543,078 + +0.1 543,078 + -0.4 543,078 + +0.6 543,078 + -0.4 543,078 + -0.7 543,078 + -0.9 543,078 + +0.1 543,079 - -2.7 543,079 - -0.5 543,138 + +0.5 543,138 + +0.3 543,138 + -1.0 543,138 + +1.2 543,138 + +0.4 543,138 + -2.1 543,138 + -1.7 543,138 + +0.2 543,138 + -1.0 543,138 + +2.0 543,138 + -1.2 543,138 + -0.4 543,138 + -0.1 543,138 + -1.1 543,138 + -1.2 543,138 + +0.7 543,139 - +0.0 543,139 - -0.6 543,139 - -0.8 543,139 - -1.4 543,139 - -1.0 543,139 - -0.1 543,168 + +0.1 543,168 + -1.9 543,168 + -2.3 543,168 + -1.6 543,168 + +0.6 543,169 - +0.9 543,169 - -1.6 543,169 - -0.8 543,169 - +0.1 543,169 - +0.0 543,169 - -1.2 543,180 + +0.6 543,180 + -2.4 543,180 + -0.2 543,180 + -0.1 543,180 + -0.6 543,180 + +0.7 543,180 + -1.0 543,180 + +0.6 543,180 + -1.3 543,180 + +0.5 543,180 + +0.6 543,180 + +0.0 543,180 + +1.2 543,181 - -2.5 543,181 - -1.4 543,181 - -2.1 543,181 - +0.7 543,181 - -1.7 543,181 - -2.9 543,181 - -2.3 543,181 - +0.0 543,181 - -0.7 543,181 - -0.8 543,240 + -0.7 543,240 + +0.3 543,240 + +0.3 543,240 + +0.9 543,240 + -1.7 543,241 - +0.4 543,241 - -2.2 543,291 + +0.4 543,291 + -0.1 543,292 - -1.8 543,292 - -2.0 543,345 + -0.5 543,345 + +0.1 543,345 + +0.0 543,345 + +0.4 543,345 + -0.8 543,345 + -0.6 543,345 + +0.6 543,345 + -1.2 543,345 + -0.3 543,345 + -0.1 543,345 + +0.4 543,345 + -0.3 543,345 + -0.5 543,345 + -0.5 543,345 + -0.7 543,346 - -1.1 543,346 - -0.1 543,346 - -2.9 543,346 - -0.1 543,346 - -1.2 543,346 - +1.2 543,346 - -0.4 543,346 - -0.6 543,346 - -0.5 543,346 - -0.1 543,346 - -1.4 543,346 - -0.6 543,346 - -1.4 543,346 - -0.7 543,346 - -0.4 543,346 - +1.0 543,346 - +1.2 543,346 - -1.2 543,346 - -0.2 543,346 - -0.8 543,410 + -0.4 543,410 + +0.6 543,411 - -1.7 543,411 - -0.9 543,411 - -1.9 543,473 + MPMX19_04209 0.10 -0.3 543,594 + MPMX19_04209 0.12 +0.9 543,594 + MPMX19_04209 0.12 +0.2 543,594 + MPMX19_04209 0.12 -0.1 543,594 + MPMX19_04209 0.12 +0.0 543,594 + MPMX19_04209 0.12 -0.6 543,594 + MPMX19_04209 0.12 -0.2
Or see this region's nucleotide sequence