Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04124 and MPMX19_04125 are separated by 135 nucleotides MPMX19_04125 and MPMX19_04126 are separated by 126 nucleotides MPMX19_04126 and MPMX19_04127 are separated by 19 nucleotides MPMX19_04127 and MPMX19_04128 are separated by 269 nucleotides
MPMX19_04124: MPMX19_04124 - hypothetical protein, at 434,461 to 435,942
_04124
MPMX19_04125: MPMX19_04125 - hypothetical protein, at 436,078 to 436,569
_04125
MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424
_04126
MPMX19_04127: MPMX19_04127 - hypothetical protein, at 437,444 to 437,938
_04127
MPMX19_04128: MPMX19_04128 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 438,208 to 438,774
_04128
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.120 kb on + strand at 436.120 kb on + strand at 436.121 kb on - strand at 436.121 kb on - strand at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.172 kb on + strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.173 kb on - strand, within MPMX19_04125 at 436.377 kb on + strand, within MPMX19_04125 at 436.378 kb on - strand, within MPMX19_04125 at 436.588 kb on - strand at 436.602 kb on + strand at 436.603 kb on - strand at 436.603 kb on - strand at 436.603 kb on - strand at 436.604 kb on + strand at 436.605 kb on - strand at 436.605 kb on - strand at 436.605 kb on - strand at 436.675 kb on + strand at 436.675 kb on + strand at 436.676 kb on - strand at 436.676 kb on - strand at 436.677 kb on + strand at 436.757 kb on + strand at 436.757 kb on + strand at 436.757 kb on + strand at 436.757 kb on + strand at 436.758 kb on - strand at 436.758 kb on - strand at 436.758 kb on - strand at 436.758 kb on - strand at 436.758 kb on - strand at 436.967 kb on + strand, within MPMX19_04126 at 436.967 kb on + strand, within MPMX19_04126 at 436.967 kb on + strand, within MPMX19_04126 at 436.967 kb on + strand, within MPMX19_04126 at 436.967 kb on + strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.968 kb on - strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.985 kb on + strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 436.986 kb on - strand, within MPMX19_04126 at 437.333 kb on + strand, within MPMX19_04126 at 437.817 kb on + strand, within MPMX19_04127 at 437.818 kb on - strand, within MPMX19_04127 at 437.818 kb on - strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.856 kb on + strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.857 kb on - strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.868 kb on + strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.869 kb on - strand, within MPMX19_04127 at 437.896 kb on + strand at 437.896 kb on + strand at 437.896 kb on + strand at 437.897 kb on - strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.158 kb on + strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.159 kb on - strand at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.298 kb on - strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.373 kb on + strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128 at 438.374 kb on - strand, within MPMX19_04128
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 436,120 + -1.0 436,120 + -1.6 436,121 - -0.4 436,121 - +0.4 436,172 + MPMX19_04125 0.19 -1.3 436,172 + MPMX19_04125 0.19 -1.4 436,172 + MPMX19_04125 0.19 -2.5 436,172 + MPMX19_04125 0.19 +0.3 436,172 + MPMX19_04125 0.19 +0.4 436,172 + MPMX19_04125 0.19 -0.7 436,172 + MPMX19_04125 0.19 -1.0 436,172 + MPMX19_04125 0.19 -1.8 436,173 - MPMX19_04125 0.19 -0.3 436,173 - MPMX19_04125 0.19 -0.3 436,173 - MPMX19_04125 0.19 -0.9 436,173 - MPMX19_04125 0.19 -1.7 436,173 - MPMX19_04125 0.19 -0.0 436,173 - MPMX19_04125 0.19 +0.9 436,173 - MPMX19_04125 0.19 -0.8 436,173 - MPMX19_04125 0.19 -1.6 436,173 - MPMX19_04125 0.19 -0.5 436,173 - MPMX19_04125 0.19 -0.7 436,377 + MPMX19_04125 0.61 -0.2 436,378 - MPMX19_04125 0.61 +0.4 436,588 - -2.3 436,602 + -0.3 436,603 - -0.2 436,603 - +0.2 436,603 - -2.2 436,604 + -0.3 436,605 - -0.2 436,605 - -3.6 436,605 - -1.0 436,675 + -1.1 436,675 + +0.6 436,676 - +0.9 436,676 - +1.1 436,677 + -1.7 436,757 + +0.0 436,757 + +0.4 436,757 + +0.8 436,757 + -0.2 436,758 - -0.8 436,758 - +0.7 436,758 - -1.9 436,758 - -1.0 436,758 - -0.6 436,967 + MPMX19_04126 0.37 -0.2 436,967 + MPMX19_04126 0.37 -0.4 436,967 + MPMX19_04126 0.37 +0.2 436,967 + MPMX19_04126 0.37 +0.2 436,967 + MPMX19_04126 0.37 -0.5 436,968 - MPMX19_04126 0.37 +0.6 436,968 - MPMX19_04126 0.37 -1.4 436,968 - MPMX19_04126 0.37 +1.0 436,968 - MPMX19_04126 0.37 +0.3 436,968 - MPMX19_04126 0.37 -0.2 436,968 - MPMX19_04126 0.37 -0.8 436,968 - MPMX19_04126 0.37 -2.0 436,968 - MPMX19_04126 0.37 +1.3 436,968 - MPMX19_04126 0.37 -0.4 436,985 + MPMX19_04126 0.40 -1.4 436,985 + MPMX19_04126 0.40 -1.1 436,985 + MPMX19_04126 0.40 -1.1 436,985 + MPMX19_04126 0.40 -2.5 436,985 + MPMX19_04126 0.40 +0.9 436,985 + MPMX19_04126 0.40 +0.4 436,985 + MPMX19_04126 0.40 -0.4 436,985 + MPMX19_04126 0.40 -0.3 436,985 + MPMX19_04126 0.40 -0.6 436,985 + MPMX19_04126 0.40 -0.4 436,985 + MPMX19_04126 0.40 -0.5 436,985 + MPMX19_04126 0.40 +1.0 436,985 + MPMX19_04126 0.40 +0.2 436,985 + MPMX19_04126 0.40 -0.6 436,985 + MPMX19_04126 0.40 +0.3 436,985 + MPMX19_04126 0.40 -0.9 436,985 + MPMX19_04126 0.40 -0.9 436,985 + MPMX19_04126 0.40 -0.0 436,985 + MPMX19_04126 0.40 +0.1 436,985 + MPMX19_04126 0.40 +1.3 436,985 + MPMX19_04126 0.40 +0.7 436,985 + MPMX19_04126 0.40 -1.2 436,985 + MPMX19_04126 0.40 -0.5 436,985 + MPMX19_04126 0.40 +0.3 436,985 + MPMX19_04126 0.40 -0.3 436,985 + MPMX19_04126 0.40 +0.2 436,985 + MPMX19_04126 0.40 -0.0 436,985 + MPMX19_04126 0.40 -1.1 436,985 + MPMX19_04126 0.40 -0.5 436,985 + MPMX19_04126 0.40 +1.0 436,986 - MPMX19_04126 0.40 -1.9 436,986 - MPMX19_04126 0.40 -1.1 436,986 - MPMX19_04126 0.40 -0.2 436,986 - MPMX19_04126 0.40 -0.5 436,986 - MPMX19_04126 0.40 +0.2 436,986 - MPMX19_04126 0.40 -0.8 436,986 - MPMX19_04126 0.40 -1.2 436,986 - MPMX19_04126 0.40 -1.8 436,986 - MPMX19_04126 0.40 -0.7 436,986 - MPMX19_04126 0.40 -1.2 436,986 - MPMX19_04126 0.40 -0.7 436,986 - MPMX19_04126 0.40 -0.1 436,986 - MPMX19_04126 0.40 +0.2 436,986 - MPMX19_04126 0.40 -0.8 436,986 - MPMX19_04126 0.40 -1.5 436,986 - MPMX19_04126 0.40 -2.7 436,986 - MPMX19_04126 0.40 -1.8 436,986 - MPMX19_04126 0.40 -0.1 436,986 - MPMX19_04126 0.40 -0.2 436,986 - MPMX19_04126 0.40 -0.4 436,986 - MPMX19_04126 0.40 +0.2 436,986 - MPMX19_04126 0.40 -0.8 436,986 - MPMX19_04126 0.40 +0.4 436,986 - MPMX19_04126 0.40 -2.0 436,986 - MPMX19_04126 0.40 +1.3 436,986 - MPMX19_04126 0.40 +0.2 436,986 - MPMX19_04126 0.40 -1.5 436,986 - MPMX19_04126 0.40 -1.0 436,986 - MPMX19_04126 0.40 +0.5 437,333 + MPMX19_04126 0.87 +0.2 437,817 + MPMX19_04127 0.75 +0.3 437,818 - MPMX19_04127 0.76 -0.6 437,818 - MPMX19_04127 0.76 -1.2 437,856 + MPMX19_04127 0.83 -0.8 437,856 + MPMX19_04127 0.83 +0.3 437,856 + MPMX19_04127 0.83 -0.3 437,856 + MPMX19_04127 0.83 -2.3 437,856 + MPMX19_04127 0.83 +0.1 437,856 + MPMX19_04127 0.83 -1.4 437,857 - MPMX19_04127 0.83 -0.2 437,857 - MPMX19_04127 0.83 -1.0 437,857 - MPMX19_04127 0.83 -2.0 437,857 - MPMX19_04127 0.83 -0.4 437,868 + MPMX19_04127 0.86 -1.2 437,868 + MPMX19_04127 0.86 -0.3 437,868 + MPMX19_04127 0.86 -0.2 437,868 + MPMX19_04127 0.86 -0.4 437,868 + MPMX19_04127 0.86 -0.6 437,868 + MPMX19_04127 0.86 -0.4 437,868 + MPMX19_04127 0.86 -0.3 437,869 - MPMX19_04127 0.86 -1.8 437,869 - MPMX19_04127 0.86 +0.1 437,869 - MPMX19_04127 0.86 -0.3 437,869 - MPMX19_04127 0.86 -0.3 437,869 - MPMX19_04127 0.86 -1.0 437,869 - MPMX19_04127 0.86 -1.9 437,869 - MPMX19_04127 0.86 -1.1 437,869 - MPMX19_04127 0.86 -1.1 437,869 - MPMX19_04127 0.86 -1.7 437,869 - MPMX19_04127 0.86 -0.3 437,896 + -0.3 437,896 + -0.1 437,896 + -0.6 437,897 - -0.7 438,158 + -0.0 438,158 + -0.8 438,158 + -0.8 438,158 + +0.2 438,158 + -0.0 438,158 + -0.6 438,158 + +0.8 438,158 + +0.6 438,158 + +1.1 438,158 + -0.2 438,158 + +1.1 438,159 - -0.1 438,159 - +0.6 438,159 - -1.4 438,159 - -0.0 438,159 - -0.3 438,159 - -1.1 438,159 - -0.2 438,159 - -0.5 438,159 - +0.6 438,159 - +0.2 438,298 - MPMX19_04128 0.16 +0.3 438,298 - MPMX19_04128 0.16 -0.3 438,298 - MPMX19_04128 0.16 +0.0 438,298 - MPMX19_04128 0.16 -1.1 438,373 + MPMX19_04128 0.29 -0.8 438,373 + MPMX19_04128 0.29 -0.3 438,373 + MPMX19_04128 0.29 +0.6 438,373 + MPMX19_04128 0.29 +0.1 438,373 + MPMX19_04128 0.29 -0.2 438,373 + MPMX19_04128 0.29 -0.1 438,374 - MPMX19_04128 0.29 +0.4 438,374 - MPMX19_04128 0.29 -0.9 438,374 - MPMX19_04128 0.29 -0.3 438,374 - MPMX19_04128 0.29 -0.7 438,374 - MPMX19_04128 0.29 +0.6
Or see this region's nucleotide sequence