Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04090 and MPMX19_04091 are separated by 4 nucleotides MPMX19_04091 and MPMX19_04092 overlap by 1 nucleotides MPMX19_04092 and MPMX19_04093 are separated by 34 nucleotides MPMX19_04093 and MPMX19_04094 are separated by 62 nucleotides
MPMX19_04090: MPMX19_04090 - Anaerobic nitric oxide reductase transcription regulator NorR, at 394,817 to 396,373
_04090
MPMX19_04091: MPMX19_04091 - Chemotaxis protein PomA, at 396,378 to 397,316
_04091
MPMX19_04092: MPMX19_04092 - Flagellar motor switch protein FliN, at 397,316 to 397,633
_04092
MPMX19_04093: MPMX19_04093 - hypothetical protein, at 397,668 to 398,444
_04093
MPMX19_04094: MPMX19_04094 - Flagellar M-ring protein, at 398,507 to 400,168
_04094
Position (kb) 397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.339 kb on + strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.340 kb on - strand at 396.373 kb on + strand at 396.373 kb on + strand at 396.374 kb on - strand at 396.374 kb on - strand at 396.374 kb on - strand at 396.374 kb on - strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.379 kb on + strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.380 kb on - strand at 396.412 kb on + strand at 396.412 kb on + strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.413 kb on - strand at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.506 kb on + strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.507 kb on - strand, within MPMX19_04091 at 396.508 kb on + strand, within MPMX19_04091 at 396.508 kb on + strand, within MPMX19_04091 at 396.509 kb on - strand, within MPMX19_04091 at 396.509 kb on - strand, within MPMX19_04091 at 396.598 kb on + strand, within MPMX19_04091 at 396.598 kb on + strand, within MPMX19_04091 at 396.598 kb on + strand, within MPMX19_04091 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.413 kb on + strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.414 kb on - strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.539 kb on + strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.540 kb on - strand, within MPMX19_04092 at 397.578 kb on + strand, within MPMX19_04092 at 397.578 kb on + strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.579 kb on - strand, within MPMX19_04092 at 397.669 kb on + strand at 397.669 kb on + strand at 397.670 kb on - strand at 397.670 kb on - strand at 398.155 kb on + strand, within MPMX19_04093 at 398.156 kb on - strand, within MPMX19_04093 at 398.156 kb on - strand, within MPMX19_04093 at 398.203 kb on + strand, within MPMX19_04093 at 398.204 kb on - strand, within MPMX19_04093 at 398.251 kb on + strand, within MPMX19_04093 at 398.251 kb on + strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.252 kb on - strand, within MPMX19_04093 at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.520 kb on + strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand at 398.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 396,339 + +0.3 396,339 + -1.0 396,339 + -0.5 396,339 + -0.7 396,339 + -1.6 396,339 + -2.0 396,339 + -0.1 396,339 + -0.0 396,339 + -1.6 396,339 + -0.4 396,340 - -2.0 396,340 - -1.1 396,340 - -0.6 396,340 - +0.1 396,340 - -1.7 396,340 - -0.3 396,340 - -0.3 396,340 - -0.3 396,340 - -0.8 396,340 - -0.8 396,340 - +0.9 396,340 - -1.2 396,340 - -2.1 396,340 - -0.8 396,373 + -2.3 396,373 + -0.4 396,374 - -0.6 396,374 - -1.5 396,374 - -0.9 396,374 - -0.7 396,379 + -2.1 396,379 + -0.7 396,379 + +0.2 396,379 + -0.2 396,379 + -2.4 396,379 + -2.0 396,379 + -0.0 396,379 + -0.6 396,379 + -1.4 396,379 + -1.6 396,379 + -1.7 396,379 + -0.4 396,379 + -0.0 396,379 + +0.1 396,379 + -0.6 396,379 + -1.6 396,379 + -0.8 396,379 + -0.2 396,379 + -1.5 396,379 + -0.6 396,379 + -0.0 396,379 + -1.0 396,379 + -2.5 396,379 + -2.0 396,380 - -0.8 396,380 - -1.4 396,380 - -0.5 396,380 - +0.2 396,380 - -1.4 396,380 - -0.4 396,380 - -0.5 396,380 - -0.2 396,380 - -0.4 396,380 - -1.2 396,380 - -1.9 396,380 - -0.7 396,380 - +0.7 396,380 - +0.7 396,380 - -0.9 396,412 + -2.1 396,412 + -1.9 396,413 - +0.2 396,413 - -0.0 396,413 - -1.1 396,413 - -0.4 396,413 - +0.5 396,413 - -1.9 396,413 - -1.3 396,506 + MPMX19_04091 0.14 -1.4 396,506 + MPMX19_04091 0.14 -1.3 396,506 + MPMX19_04091 0.14 -1.2 396,506 + MPMX19_04091 0.14 -1.5 396,506 + MPMX19_04091 0.14 -0.6 396,506 + MPMX19_04091 0.14 -1.4 396,506 + MPMX19_04091 0.14 -0.9 396,506 + MPMX19_04091 0.14 -0.9 396,506 + MPMX19_04091 0.14 -1.7 396,506 + MPMX19_04091 0.14 -1.1 396,506 + MPMX19_04091 0.14 -0.6 396,506 + MPMX19_04091 0.14 -2.0 396,506 + MPMX19_04091 0.14 -0.9 396,506 + MPMX19_04091 0.14 +0.3 396,506 + MPMX19_04091 0.14 -0.7 396,506 + MPMX19_04091 0.14 -1.6 396,506 + MPMX19_04091 0.14 +0.3 396,506 + MPMX19_04091 0.14 -1.2 396,506 + MPMX19_04091 0.14 -0.6 396,506 + MPMX19_04091 0.14 -0.5 396,506 + MPMX19_04091 0.14 -1.7 396,506 + MPMX19_04091 0.14 -1.7 396,506 + MPMX19_04091 0.14 -1.4 396,506 + MPMX19_04091 0.14 -0.4 396,506 + MPMX19_04091 0.14 -0.4 396,506 + MPMX19_04091 0.14 -0.6 396,506 + MPMX19_04091 0.14 -0.3 396,507 - MPMX19_04091 0.14 +0.5 396,507 - MPMX19_04091 0.14 -0.9 396,507 - MPMX19_04091 0.14 -0.8 396,507 - MPMX19_04091 0.14 -0.5 396,507 - MPMX19_04091 0.14 +0.3 396,507 - MPMX19_04091 0.14 -1.6 396,507 - MPMX19_04091 0.14 -0.2 396,507 - MPMX19_04091 0.14 +0.6 396,507 - MPMX19_04091 0.14 -0.1 396,507 - MPMX19_04091 0.14 -2.0 396,507 - MPMX19_04091 0.14 -1.3 396,507 - MPMX19_04091 0.14 -0.8 396,507 - MPMX19_04091 0.14 -0.3 396,507 - MPMX19_04091 0.14 -0.5 396,507 - MPMX19_04091 0.14 -0.6 396,507 - MPMX19_04091 0.14 -0.2 396,507 - MPMX19_04091 0.14 -0.1 396,507 - MPMX19_04091 0.14 -0.1 396,507 - MPMX19_04091 0.14 -0.7 396,507 - MPMX19_04091 0.14 -0.0 396,507 - MPMX19_04091 0.14 -0.6 396,507 - MPMX19_04091 0.14 -1.5 396,507 - MPMX19_04091 0.14 +0.6 396,507 - MPMX19_04091 0.14 -1.2 396,507 - MPMX19_04091 0.14 +0.5 396,507 - MPMX19_04091 0.14 -1.0 396,507 - MPMX19_04091 0.14 -0.4 396,507 - MPMX19_04091 0.14 +0.6 396,507 - MPMX19_04091 0.14 -2.0 396,507 - MPMX19_04091 0.14 -0.9 396,507 - MPMX19_04091 0.14 +0.3 396,507 - MPMX19_04091 0.14 -1.0 396,507 - MPMX19_04091 0.14 -0.2 396,508 + MPMX19_04091 0.14 -2.0 396,508 + MPMX19_04091 0.14 +0.9 396,509 - MPMX19_04091 0.14 -0.9 396,509 - MPMX19_04091 0.14 -1.3 396,598 + MPMX19_04091 0.23 -1.4 396,598 + MPMX19_04091 0.23 +0.8 396,598 + MPMX19_04091 0.23 +0.4 397,413 + MPMX19_04092 0.31 -0.3 397,413 + MPMX19_04092 0.31 -0.7 397,413 + MPMX19_04092 0.31 -1.2 397,413 + MPMX19_04092 0.31 -1.1 397,413 + MPMX19_04092 0.31 -2.9 397,413 + MPMX19_04092 0.31 -1.0 397,413 + MPMX19_04092 0.31 -0.7 397,413 + MPMX19_04092 0.31 -2.8 397,413 + MPMX19_04092 0.31 -1.6 397,413 + MPMX19_04092 0.31 -0.6 397,413 + MPMX19_04092 0.31 -0.6 397,414 - MPMX19_04092 0.31 -2.1 397,414 - MPMX19_04092 0.31 -0.6 397,414 - MPMX19_04092 0.31 -1.7 397,414 - MPMX19_04092 0.31 -2.2 397,414 - MPMX19_04092 0.31 -3.4 397,414 - MPMX19_04092 0.31 -2.1 397,414 - MPMX19_04092 0.31 -2.2 397,414 - MPMX19_04092 0.31 -1.2 397,414 - MPMX19_04092 0.31 -2.0 397,414 - MPMX19_04092 0.31 -2.3 397,414 - MPMX19_04092 0.31 -2.6 397,414 - MPMX19_04092 0.31 -1.7 397,414 - MPMX19_04092 0.31 -0.1 397,539 + MPMX19_04092 0.70 -1.8 397,539 + MPMX19_04092 0.70 -1.4 397,539 + MPMX19_04092 0.70 -1.0 397,539 + MPMX19_04092 0.70 -1.1 397,539 + MPMX19_04092 0.70 -0.3 397,539 + MPMX19_04092 0.70 -1.9 397,539 + MPMX19_04092 0.70 -1.6 397,539 + MPMX19_04092 0.70 -0.4 397,539 + MPMX19_04092 0.70 -1.7 397,539 + MPMX19_04092 0.70 +0.6 397,539 + MPMX19_04092 0.70 -0.0 397,539 + MPMX19_04092 0.70 -0.4 397,539 + MPMX19_04092 0.70 -1.6 397,539 + MPMX19_04092 0.70 -1.1 397,539 + MPMX19_04092 0.70 -1.2 397,540 - MPMX19_04092 0.70 -1.2 397,540 - MPMX19_04092 0.70 -1.6 397,540 - MPMX19_04092 0.70 -1.9 397,540 - MPMX19_04092 0.70 -3.2 397,540 - MPMX19_04092 0.70 -0.2 397,540 - MPMX19_04092 0.70 -2.0 397,540 - MPMX19_04092 0.70 +3.7 397,540 - MPMX19_04092 0.70 -2.1 397,578 + MPMX19_04092 0.82 -0.0 397,578 + MPMX19_04092 0.82 -1.3 397,579 - MPMX19_04092 0.83 -1.1 397,579 - MPMX19_04092 0.83 -2.7 397,579 - MPMX19_04092 0.83 -1.2 397,669 + -0.7 397,669 + -0.4 397,670 - +0.6 397,670 - -1.6 398,155 + MPMX19_04093 0.63 +0.8 398,156 - MPMX19_04093 0.63 -1.6 398,156 - MPMX19_04093 0.63 -2.9 398,203 + MPMX19_04093 0.69 -0.4 398,204 - MPMX19_04093 0.69 -1.8 398,251 + MPMX19_04093 0.75 -0.4 398,251 + MPMX19_04093 0.75 +1.3 398,252 - MPMX19_04093 0.75 -1.2 398,252 - MPMX19_04093 0.75 -2.0 398,252 - MPMX19_04093 0.75 -1.5 398,252 - MPMX19_04093 0.75 -1.9 398,252 - MPMX19_04093 0.75 -1.9 398,520 + -1.2 398,520 + -1.9 398,520 + -0.4 398,520 + -0.1 398,520 + -0.7 398,520 + -0.6 398,520 + -0.7 398,520 + -1.1 398,520 + -1.9 398,520 + +1.6 398,521 - -2.7 398,521 - -3.2 398,521 - -3.1 398,521 - +1.2 398,521 - -2.3 398,521 - -2.3 398,521 - -0.9 398,521 - +0.6 398,521 - -1.2
Or see this region's nucleotide sequence