Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03562 and MPMX19_03563 are separated by 45 nucleotides MPMX19_03563 and MPMX19_03564 are separated by 118 nucleotides
MPMX19_03562: MPMX19_03562 - Propane 2-monooxygenase, hydroxylase component small subunit, at 982,928 to 984,061
_03562
MPMX19_03563: MPMX19_03563 - Propane 2-monooxygenase, reductase component, at 984,107 to 985,165
_03563
MPMX19_03564: MPMX19_03564 - Propane 2-monooxygenase, hydroxylase component large subunit, at 985,284 to 986,948
_03564
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.253 kb on + strand, within MPMX19_03562 at 983.253 kb on + strand, within MPMX19_03562 at 983.253 kb on + strand, within MPMX19_03562 at 983.382 kb on + strand, within MPMX19_03562 at 983.382 kb on + strand, within MPMX19_03562 at 983.383 kb on - strand, within MPMX19_03562 at 983.383 kb on - strand, within MPMX19_03562 at 983.413 kb on + strand, within MPMX19_03562 at 983.413 kb on + strand, within MPMX19_03562 at 983.414 kb on - strand, within MPMX19_03562 at 983.414 kb on - strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.554 kb on - strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.776 kb on - strand, within MPMX19_03562 at 983.856 kb on + strand, within MPMX19_03562 at 983.856 kb on + strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.904 kb on + strand, within MPMX19_03562 at 983.904 kb on + strand, within MPMX19_03562 at 983.905 kb on - strand, within MPMX19_03562 at 983.905 kb on - strand, within MPMX19_03562 at 983.946 kb on + strand, within MPMX19_03562 at 983.947 kb on - strand, within MPMX19_03562 at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 984.011 kb on + strand at 984.011 kb on + strand at 984.012 kb on - strand at 984.012 kb on - strand at 984.012 kb on - strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.085 kb on - strand at 984.085 kb on - strand at 984.085 kb on - strand at 984.138 kb on + strand at 984.138 kb on + strand at 984.139 kb on - strand at 984.139 kb on - strand at 984.414 kb on + strand, within MPMX19_03563 at 984.550 kb on - strand, within MPMX19_03563 at 984.624 kb on + strand, within MPMX19_03563 at 984.624 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.960 kb on + strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 985.148 kb on + strand at 985.149 kb on - strand at 985.198 kb on + strand at 985.198 kb on + strand at 985.199 kb on - strand at 985.199 kb on - strand at 985.519 kb on + strand, within MPMX19_03564 at 985.519 kb on + strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.582 kb on + strand, within MPMX19_03564 at 985.582 kb on + strand, within MPMX19_03564 at 985.583 kb on - strand, within MPMX19_03564 at 985.583 kb on - strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.721 kb on - strand, within MPMX19_03564 at 985.726 kb on + strand, within MPMX19_03564 at 985.726 kb on + strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.810 kb on + strand, within MPMX19_03564 at 985.810 kb on + strand, within MPMX19_03564 at 985.822 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.988 kb on - strand, within MPMX19_03564 at 986.008 kb on + strand, within MPMX19_03564 at 986.008 kb on + strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.017 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.021 kb on - strand, within MPMX19_03564 at 986.021 kb on - strand, within MPMX19_03564 at 986.056 kb on + strand, within MPMX19_03564 at 986.057 kb on - strand, within MPMX19_03564 at 986.057 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 983,253 + MPMX19_03562 0.29 -1.4 983,253 + MPMX19_03562 0.29 -1.1 983,253 + MPMX19_03562 0.29 +0.2 983,382 + MPMX19_03562 0.40 -0.4 983,382 + MPMX19_03562 0.40 +0.5 983,383 - MPMX19_03562 0.40 +0.2 983,383 - MPMX19_03562 0.40 +0.9 983,413 + MPMX19_03562 0.43 +0.2 983,413 + MPMX19_03562 0.43 +0.2 983,414 - MPMX19_03562 0.43 -1.1 983,414 - MPMX19_03562 0.43 -0.5 983,520 + MPMX19_03562 0.52 +0.2 983,520 + MPMX19_03562 0.52 +0.3 983,520 + MPMX19_03562 0.52 -0.8 983,520 + MPMX19_03562 0.52 -1.0 983,521 - MPMX19_03562 0.52 -0.6 983,521 - MPMX19_03562 0.52 +1.0 983,521 - MPMX19_03562 0.52 -0.2 983,521 - MPMX19_03562 0.52 +0.2 983,554 - MPMX19_03562 0.55 +0.2 983,595 + MPMX19_03562 0.59 -2.1 983,595 + MPMX19_03562 0.59 -0.0 983,595 + MPMX19_03562 0.59 +0.7 983,595 + MPMX19_03562 0.59 -0.1 983,595 + MPMX19_03562 0.59 -0.3 983,596 - MPMX19_03562 0.59 -0.7 983,596 - MPMX19_03562 0.59 -0.1 983,596 - MPMX19_03562 0.59 +0.2 983,596 - MPMX19_03562 0.59 +0.2 983,596 - MPMX19_03562 0.59 +0.9 983,637 + MPMX19_03562 0.63 +1.1 983,637 + MPMX19_03562 0.63 +0.2 983,637 + MPMX19_03562 0.63 +0.6 983,638 - MPMX19_03562 0.63 -0.6 983,638 - MPMX19_03562 0.63 -0.3 983,638 - MPMX19_03562 0.63 -0.6 983,776 - MPMX19_03562 0.75 -0.8 983,856 + MPMX19_03562 0.82 -0.4 983,856 + MPMX19_03562 0.82 +0.7 983,857 - MPMX19_03562 0.82 -0.4 983,857 - MPMX19_03562 0.82 -0.5 983,857 - MPMX19_03562 0.82 -0.9 983,857 - MPMX19_03562 0.82 +0.1 983,857 - MPMX19_03562 0.82 -0.5 983,904 + MPMX19_03562 0.86 -1.8 983,904 + MPMX19_03562 0.86 -1.7 983,905 - MPMX19_03562 0.86 -0.9 983,905 - MPMX19_03562 0.86 +0.4 983,946 + MPMX19_03562 0.90 -0.4 983,947 - MPMX19_03562 0.90 +0.5 983,979 + -1.1 983,979 + -0.1 983,979 + +0.9 983,979 + +0.2 983,979 + -0.2 983,979 + -1.1 983,979 + -0.1 983,979 + -0.3 983,980 - -0.5 983,980 - +0.9 983,980 - +0.4 983,980 - +0.6 983,980 - +0.9 983,980 - +0.3 983,980 - -0.5 983,980 - -2.1 983,980 - +0.1 983,980 - -0.5 984,011 + -1.4 984,011 + -1.0 984,012 - +1.0 984,012 - -0.6 984,012 - -3.2 984,084 + -0.7 984,084 + +0.5 984,084 + -0.4 984,084 + +0.1 984,084 + -0.2 984,084 + +0.1 984,084 + +1.5 984,085 - +0.2 984,085 - -1.2 984,085 - -0.4 984,138 + -1.4 984,138 + -0.4 984,139 - +0.6 984,139 - -1.8 984,414 + MPMX19_03563 0.29 +0.0 984,550 - MPMX19_03563 0.42 +0.2 984,624 + MPMX19_03563 0.49 -0.5 984,624 + MPMX19_03563 0.49 -1.6 984,723 + MPMX19_03563 0.58 +0.4 984,723 + MPMX19_03563 0.58 +0.5 984,723 + MPMX19_03563 0.58 -0.8 984,724 - MPMX19_03563 0.58 -0.5 984,724 - MPMX19_03563 0.58 +0.5 984,724 - MPMX19_03563 0.58 +0.9 984,724 - MPMX19_03563 0.58 +0.8 984,724 - MPMX19_03563 0.58 -0.4 984,724 - MPMX19_03563 0.58 -0.2 984,724 - MPMX19_03563 0.58 -0.3 984,724 - MPMX19_03563 0.58 -1.0 984,724 - MPMX19_03563 0.58 -1.3 984,724 - MPMX19_03563 0.58 -0.0 984,724 - MPMX19_03563 0.58 -0.2 984,724 - MPMX19_03563 0.58 -1.4 984,724 - MPMX19_03563 0.58 +0.5 984,861 + MPMX19_03563 0.71 +0.6 984,861 + MPMX19_03563 0.71 +0.2 984,861 + MPMX19_03563 0.71 -0.8 984,861 + MPMX19_03563 0.71 -1.4 984,861 + MPMX19_03563 0.71 -0.2 984,861 + MPMX19_03563 0.71 +0.6 984,861 + MPMX19_03563 0.71 -1.3 984,861 + MPMX19_03563 0.71 -0.8 984,861 + MPMX19_03563 0.71 +0.2 984,861 + MPMX19_03563 0.71 -0.1 984,861 + MPMX19_03563 0.71 -0.9 984,862 - MPMX19_03563 0.71 +0.4 984,862 - MPMX19_03563 0.71 -0.3 984,862 - MPMX19_03563 0.71 +2.0 984,862 - MPMX19_03563 0.71 +0.9 984,862 - MPMX19_03563 0.71 -0.7 984,862 - MPMX19_03563 0.71 +0.4 984,862 - MPMX19_03563 0.71 +0.3 984,862 - MPMX19_03563 0.71 -1.1 984,862 - MPMX19_03563 0.71 -0.5 984,891 + MPMX19_03563 0.74 -2.4 984,891 + MPMX19_03563 0.74 +0.9 984,891 + MPMX19_03563 0.74 -1.8 984,891 + MPMX19_03563 0.74 +0.3 984,960 + MPMX19_03563 0.81 -0.5 984,961 - MPMX19_03563 0.81 -0.8 984,961 - MPMX19_03563 0.81 +0.1 984,961 - MPMX19_03563 0.81 +0.1 984,961 - MPMX19_03563 0.81 -1.5 985,148 + +1.5 985,149 - -0.2 985,198 + -0.4 985,198 + +0.7 985,199 - +0.5 985,199 - -0.0 985,519 + MPMX19_03564 0.14 +0.3 985,519 + MPMX19_03564 0.14 +0.2 985,520 - MPMX19_03564 0.14 -0.7 985,520 - MPMX19_03564 0.14 -0.2 985,520 - MPMX19_03564 0.14 -0.5 985,520 - MPMX19_03564 0.14 +0.3 985,520 - MPMX19_03564 0.14 -1.5 985,520 - MPMX19_03564 0.14 -0.7 985,582 + MPMX19_03564 0.18 -0.6 985,582 + MPMX19_03564 0.18 +1.5 985,583 - MPMX19_03564 0.18 -0.1 985,583 - MPMX19_03564 0.18 +0.6 985,633 + MPMX19_03564 0.21 -0.4 985,633 + MPMX19_03564 0.21 +0.3 985,633 + MPMX19_03564 0.21 -1.6 985,633 + MPMX19_03564 0.21 +0.9 985,634 - MPMX19_03564 0.21 -0.5 985,634 - MPMX19_03564 0.21 +1.5 985,634 - MPMX19_03564 0.21 -0.1 985,634 - MPMX19_03564 0.21 -0.4 985,634 - MPMX19_03564 0.21 -2.4 985,634 - MPMX19_03564 0.21 -1.7 985,721 - MPMX19_03564 0.26 -2.2 985,726 + MPMX19_03564 0.27 -1.7 985,726 + MPMX19_03564 0.27 -1.1 985,727 - MPMX19_03564 0.27 -1.4 985,727 - MPMX19_03564 0.27 -0.2 985,727 - MPMX19_03564 0.27 -0.1 985,727 - MPMX19_03564 0.27 -0.6 985,780 + MPMX19_03564 0.30 -1.1 985,780 + MPMX19_03564 0.30 -2.1 985,780 + MPMX19_03564 0.30 -0.1 985,780 + MPMX19_03564 0.30 +0.6 985,810 + MPMX19_03564 0.32 +2.0 985,810 + MPMX19_03564 0.32 -1.0 985,822 + MPMX19_03564 0.32 -1.4 985,924 + MPMX19_03564 0.38 +0.0 985,924 + MPMX19_03564 0.38 -1.3 985,924 + MPMX19_03564 0.38 -0.8 985,924 + MPMX19_03564 0.38 +0.5 985,924 + MPMX19_03564 0.38 -0.2 985,924 + MPMX19_03564 0.38 -0.5 985,925 - MPMX19_03564 0.38 +0.3 985,925 - MPMX19_03564 0.38 +0.2 985,925 - MPMX19_03564 0.38 -0.6 985,925 - MPMX19_03564 0.38 +0.2 985,925 - MPMX19_03564 0.38 -0.4 985,925 - MPMX19_03564 0.38 -0.5 985,988 - MPMX19_03564 0.42 -0.4 986,008 + MPMX19_03564 0.43 -0.3 986,008 + MPMX19_03564 0.43 -0.2 986,009 - MPMX19_03564 0.44 -0.1 986,009 - MPMX19_03564 0.44 +0.2 986,009 - MPMX19_03564 0.44 -3.1 986,009 - MPMX19_03564 0.44 -1.1 986,009 - MPMX19_03564 0.44 -1.7 986,017 + MPMX19_03564 0.44 -0.5 986,020 + MPMX19_03564 0.44 -0.3 986,020 + MPMX19_03564 0.44 +0.9 986,020 + MPMX19_03564 0.44 +0.0 986,021 - MPMX19_03564 0.44 -0.3 986,021 - MPMX19_03564 0.44 +1.1 986,056 + MPMX19_03564 0.46 -1.2 986,057 - MPMX19_03564 0.46 +0.1 986,057 - MPMX19_03564 0.46 -2.2 986,150 - MPMX19_03564 0.52 +1.1 986,150 - MPMX19_03564 0.52 -0.8 986,150 - MPMX19_03564 0.52 +0.3
Or see this region's nucleotide sequence