Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03403 and MPMX19_03404 are separated by 72 nucleotides MPMX19_03404 and MPMX19_03405 are separated by 291 nucleotides
MPMX19_03403: MPMX19_03403 - Glutathione transport system permease protein GsiC, at 790,068 to 791,024
_03403
MPMX19_03404: MPMX19_03404 - Glutathione-binding protein GsiB, at 791,097 to 792,599
_03404
MPMX19_03405: MPMX19_03405 - hypothetical protein, at 792,891 to 794,300
_03405
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.114 kb on + strand at 790.114 kb on + strand at 790.114 kb on + strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.147 kb on + strand at 790.148 kb on - strand at 790.238 kb on - strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.525 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.831 kb on + strand, within MPMX19_03403 at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.994 kb on - strand at 790.994 kb on - strand at 791.014 kb on + strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.067 kb on - strand at 791.109 kb on + strand at 791.109 kb on + strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.194 kb on + strand at 791.194 kb on + strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.317 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.360 kb on - strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.379 kb on - strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 792.433 kb on + strand, within MPMX19_03404 at 792.434 kb on - strand, within MPMX19_03404 at 792.434 kb on - strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.445 kb on + strand, within MPMX19_03404 at 792.446 kb on - strand, within MPMX19_03404 at 792.446 kb on - strand, within MPMX19_03404 at 792.446 kb on - strand, within MPMX19_03404 at 792.446 kb on - strand, within MPMX19_03404 at 792.796 kb on - strand at 792.838 kb on + strand at 792.839 kb on - strand at 792.863 kb on + strand at 793.031 kb on + strand at 793.031 kb on + strand at 793.032 kb on - strand, within MPMX19_03405 at 793.091 kb on + strand, within MPMX19_03405 at 793.092 kb on - strand, within MPMX19_03405 at 793.092 kb on - strand, within MPMX19_03405 at 793.092 kb on - strand, within MPMX19_03405 at 793.092 kb on - strand, within MPMX19_03405 at 793.270 kb on + strand, within MPMX19_03405 at 793.271 kb on - strand, within MPMX19_03405 at 793.271 kb on - strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.339 kb on + strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.340 kb on - strand, within MPMX19_03405 at 793.471 kb on + strand, within MPMX19_03405 at 793.471 kb on + strand, within MPMX19_03405
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 790,114 + +0.2 790,114 + -1.0 790,114 + -0.7 790,115 - -0.5 790,115 - -0.7 790,115 - +0.6 790,115 - +1.2 790,115 - -1.6 790,115 - -0.2 790,115 - +0.1 790,115 - -0.0 790,115 - -0.6 790,147 + +0.1 790,148 - +0.6 790,238 - MPMX19_03403 0.18 -1.1 790,390 + MPMX19_03403 0.34 -0.2 790,390 + MPMX19_03403 0.34 -0.1 790,390 + MPMX19_03403 0.34 +0.5 790,390 + MPMX19_03403 0.34 -0.4 790,390 + MPMX19_03403 0.34 -0.8 790,390 + MPMX19_03403 0.34 +0.0 790,390 + MPMX19_03403 0.34 +0.4 790,390 + MPMX19_03403 0.34 +0.1 790,390 + MPMX19_03403 0.34 +1.3 790,390 + MPMX19_03403 0.34 -0.7 790,391 - MPMX19_03403 0.34 -1.0 790,391 - MPMX19_03403 0.34 -0.5 790,391 - MPMX19_03403 0.34 +0.1 790,391 - MPMX19_03403 0.34 -0.1 790,391 - MPMX19_03403 0.34 +0.3 790,391 - MPMX19_03403 0.34 +0.3 790,391 - MPMX19_03403 0.34 +0.8 790,391 - MPMX19_03403 0.34 -1.3 790,391 - MPMX19_03403 0.34 -1.0 790,525 + MPMX19_03403 0.48 +0.1 790,552 + MPMX19_03403 0.51 -0.6 790,552 + MPMX19_03403 0.51 +1.2 790,552 + MPMX19_03403 0.51 +1.8 790,552 + MPMX19_03403 0.51 +1.5 790,552 + MPMX19_03403 0.51 +0.3 790,552 + MPMX19_03403 0.51 +0.0 790,552 + MPMX19_03403 0.51 -0.8 790,552 + MPMX19_03403 0.51 -0.6 790,552 + MPMX19_03403 0.51 +1.5 790,552 + MPMX19_03403 0.51 +1.1 790,553 - MPMX19_03403 0.51 -1.9 790,553 - MPMX19_03403 0.51 -0.7 790,553 - MPMX19_03403 0.51 +0.9 790,553 - MPMX19_03403 0.51 +2.7 790,553 - MPMX19_03403 0.51 -2.4 790,553 - MPMX19_03403 0.51 -0.1 790,553 - MPMX19_03403 0.51 -0.5 790,553 - MPMX19_03403 0.51 +0.5 790,553 - MPMX19_03403 0.51 -1.3 790,615 + MPMX19_03403 0.57 +0.6 790,615 + MPMX19_03403 0.57 +0.4 790,831 + MPMX19_03403 0.80 -0.3 790,993 + -0.9 790,993 + -0.1 790,993 + +0.7 790,993 + -1.3 790,994 - +0.1 790,994 - -0.2 791,014 + -1.1 791,015 - -2.0 791,015 - -0.7 791,015 - -0.1 791,067 - -0.3 791,109 + -1.7 791,109 + -0.9 791,110 - -1.5 791,110 - +0.6 791,110 - +0.1 791,194 + +0.1 791,194 + -2.5 791,195 - -1.8 791,195 - +0.4 791,195 - +0.1 791,245 + -0.6 791,245 + -1.5 791,245 + -0.8 791,246 - -0.5 791,246 - +1.3 791,246 - -0.3 791,246 - -1.0 791,246 - -0.3 791,246 - -0.5 791,246 - -1.4 791,246 - -0.5 791,246 - +0.3 791,246 - -1.5 791,246 - +0.5 791,317 + MPMX19_03404 0.15 +1.9 791,320 + MPMX19_03404 0.15 -0.4 791,320 + MPMX19_03404 0.15 -1.8 791,320 + MPMX19_03404 0.15 -0.7 791,320 + MPMX19_03404 0.15 +0.1 791,320 + MPMX19_03404 0.15 -1.0 791,321 - MPMX19_03404 0.15 -0.5 791,321 - MPMX19_03404 0.15 +0.2 791,321 - MPMX19_03404 0.15 +0.8 791,321 - MPMX19_03404 0.15 +0.8 791,360 - MPMX19_03404 0.17 +1.4 791,378 + MPMX19_03404 0.19 +0.9 791,378 + MPMX19_03404 0.19 -0.4 791,378 + MPMX19_03404 0.19 -0.8 791,378 + MPMX19_03404 0.19 +0.9 791,379 - MPMX19_03404 0.19 -1.1 791,413 + MPMX19_03404 0.21 +0.0 791,413 + MPMX19_03404 0.21 +0.8 791,413 + MPMX19_03404 0.21 +0.5 791,413 + MPMX19_03404 0.21 -1.3 791,414 - MPMX19_03404 0.21 -0.1 791,414 - MPMX19_03404 0.21 -0.8 791,414 - MPMX19_03404 0.21 -0.3 791,414 - MPMX19_03404 0.21 -0.3 791,414 - MPMX19_03404 0.21 -1.5 791,414 - MPMX19_03404 0.21 +0.4 791,414 - MPMX19_03404 0.21 +1.5 791,650 + MPMX19_03404 0.37 +0.5 791,650 + MPMX19_03404 0.37 +0.2 791,650 + MPMX19_03404 0.37 +0.5 791,650 + MPMX19_03404 0.37 -0.9 791,650 + MPMX19_03404 0.37 -0.8 791,650 + MPMX19_03404 0.37 -0.8 791,650 + MPMX19_03404 0.37 -0.7 791,650 + MPMX19_03404 0.37 -1.8 791,650 + MPMX19_03404 0.37 -0.3 791,650 + MPMX19_03404 0.37 +0.5 791,650 + MPMX19_03404 0.37 +0.2 791,650 + MPMX19_03404 0.37 +0.2 791,650 + MPMX19_03404 0.37 -0.4 791,650 + MPMX19_03404 0.37 -1.3 791,651 - MPMX19_03404 0.37 -0.9 791,651 - MPMX19_03404 0.37 -1.6 791,651 - MPMX19_03404 0.37 +0.2 791,651 - MPMX19_03404 0.37 -0.1 791,651 - MPMX19_03404 0.37 +0.8 791,651 - MPMX19_03404 0.37 +0.9 791,651 - MPMX19_03404 0.37 +0.2 791,651 - MPMX19_03404 0.37 -0.8 791,651 - MPMX19_03404 0.37 +1.0 791,651 - MPMX19_03404 0.37 -0.3 791,651 - MPMX19_03404 0.37 -1.8 791,651 - MPMX19_03404 0.37 -0.6 791,651 - MPMX19_03404 0.37 +0.4 791,651 - MPMX19_03404 0.37 -1.1 791,651 - MPMX19_03404 0.37 +0.5 791,653 + MPMX19_03404 0.37 +0.4 791,653 + MPMX19_03404 0.37 -0.4 791,653 + MPMX19_03404 0.37 -0.5 791,654 - MPMX19_03404 0.37 +0.5 791,654 - MPMX19_03404 0.37 +0.5 791,654 - MPMX19_03404 0.37 +0.4 791,654 - MPMX19_03404 0.37 +0.0 791,654 - MPMX19_03404 0.37 -0.5 791,992 + MPMX19_03404 0.60 -0.2 791,992 + MPMX19_03404 0.60 -1.5 791,993 - MPMX19_03404 0.60 -0.2 791,993 - MPMX19_03404 0.60 -0.9 791,993 - MPMX19_03404 0.60 +0.3 791,993 - MPMX19_03404 0.60 +0.1 791,993 - MPMX19_03404 0.60 +0.4 791,993 - MPMX19_03404 0.60 +0.9 792,433 + MPMX19_03404 0.89 -0.3 792,434 - MPMX19_03404 0.89 -0.3 792,434 - MPMX19_03404 0.89 -1.3 792,445 + MPMX19_03404 0.90 -1.6 792,445 + MPMX19_03404 0.90 -2.7 792,445 + MPMX19_03404 0.90 -2.7 792,445 + MPMX19_03404 0.90 +0.9 792,445 + MPMX19_03404 0.90 -0.3 792,445 + MPMX19_03404 0.90 -1.3 792,445 + MPMX19_03404 0.90 -1.0 792,445 + MPMX19_03404 0.90 +0.1 792,445 + MPMX19_03404 0.90 -0.2 792,445 + MPMX19_03404 0.90 +0.2 792,445 + MPMX19_03404 0.90 -1.0 792,445 + MPMX19_03404 0.90 -0.3 792,445 + MPMX19_03404 0.90 +0.8 792,446 - MPMX19_03404 0.90 +1.2 792,446 - MPMX19_03404 0.90 +0.0 792,446 - MPMX19_03404 0.90 -0.2 792,446 - MPMX19_03404 0.90 -0.5 792,796 - +0.9 792,838 + -0.3 792,839 - +1.2 792,863 + +0.2 793,031 + -0.2 793,031 + +0.0 793,032 - MPMX19_03405 0.10 -1.3 793,091 + MPMX19_03405 0.14 -1.4 793,092 - MPMX19_03405 0.14 +0.3 793,092 - MPMX19_03405 0.14 -1.5 793,092 - MPMX19_03405 0.14 -0.6 793,092 - MPMX19_03405 0.14 +0.9 793,270 + MPMX19_03405 0.27 -0.6 793,271 - MPMX19_03405 0.27 -1.2 793,271 - MPMX19_03405 0.27 -2.3 793,339 + MPMX19_03405 0.32 +0.3 793,339 + MPMX19_03405 0.32 -0.9 793,339 + MPMX19_03405 0.32 -0.0 793,339 + MPMX19_03405 0.32 -2.2 793,339 + MPMX19_03405 0.32 +0.5 793,339 + MPMX19_03405 0.32 +0.4 793,340 - MPMX19_03405 0.32 -0.1 793,340 - MPMX19_03405 0.32 -1.3 793,340 - MPMX19_03405 0.32 -0.3 793,340 - MPMX19_03405 0.32 +0.3 793,340 - MPMX19_03405 0.32 -1.8 793,340 - MPMX19_03405 0.32 +0.1 793,340 - MPMX19_03405 0.32 -0.1 793,340 - MPMX19_03405 0.32 +0.3 793,471 + MPMX19_03405 0.41 -1.7 793,471 + MPMX19_03405 0.41 -3.3
Or see this region's nucleotide sequence