Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03032

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03031 and MPMX19_03032 are separated by 299 nucleotidesMPMX19_03032 and MPMX19_03033 overlap by 4 nucleotides MPMX19_03031: MPMX19_03031 - hypothetical protein, at 297,839 to 298,897 _03031 MPMX19_03032: MPMX19_03032 - hypothetical protein, at 299,197 to 301,047 _03032 MPMX19_03033: MPMX19_03033 - hypothetical protein, at 301,044 to 302,054 _03033 Position (kb) 299 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 298.216 kb on - strand, within MPMX19_03031at 298.288 kb on + strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 299.032 kb on - strandat 299.051 kb on + strandat 299.052 kb on - strandat 299.052 kb on - strandat 299.052 kb on - strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.058 kb on + strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.059 kb on - strandat 299.097 kb on + strandat 299.098 kb on - strandat 299.158 kb on - strandat 299.158 kb on - strandat 299.158 kb on - strandat 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.512 kb on + strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.513 kb on - strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.524 kb on + strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.525 kb on - strand, within MPMX19_03032at 299.840 kb on - strand, within MPMX19_03032at 299.991 kb on - strand, within MPMX19_03032at 300.037 kb on + strand, within MPMX19_03032at 300.037 kb on + strand, within MPMX19_03032at 300.037 kb on + strand, within MPMX19_03032at 300.037 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.160 kb on + strand, within MPMX19_03032at 300.161 kb on - strand, within MPMX19_03032at 300.161 kb on - strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.310 kb on + strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.311 kb on - strand, within MPMX19_03032at 300.430 kb on + strand, within MPMX19_03032at 300.431 kb on - strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.454 kb on + strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.455 kb on - strand, within MPMX19_03032at 300.800 kb on - strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.808 kb on + strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 300.809 kb on - strand, within MPMX19_03032at 301.137 kb on + strandat 301.137 kb on + strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.138 kb on - strandat 301.534 kb on + strand, within MPMX19_03033at 301.534 kb on + strand, within MPMX19_03033at 301.535 kb on - strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 302.045 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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298,216 - MPMX19_03031 0.36 -0.5
298,288 + MPMX19_03031 0.42 +0.3
298,289 - MPMX19_03031 0.42 -0.8
298,289 - MPMX19_03031 0.42 +0.8
298,289 - MPMX19_03031 0.42 +0.3
298,289 - MPMX19_03031 0.42 -0.8
298,392 + MPMX19_03031 0.52 +1.8
298,392 + MPMX19_03031 0.52 +1.3
298,392 + MPMX19_03031 0.52 -0.4
298,392 + MPMX19_03031 0.52 -1.0
298,392 + MPMX19_03031 0.52 -0.0
298,392 + MPMX19_03031 0.52 -1.5
298,392 + MPMX19_03031 0.52 -0.9
298,392 + MPMX19_03031 0.52 +0.3
298,392 + MPMX19_03031 0.52 -1.1
298,393 - MPMX19_03031 0.52 -0.8
298,393 - MPMX19_03031 0.52 +0.2
298,393 - MPMX19_03031 0.52 +0.3
298,393 - MPMX19_03031 0.52 +0.9
298,393 - MPMX19_03031 0.52 -0.6
298,393 - MPMX19_03031 0.52 -0.4
298,393 - MPMX19_03031 0.52 -0.0
298,393 - MPMX19_03031 0.52 +0.6
298,393 - MPMX19_03031 0.52 -1.6
299,032 - -0.8
299,051 + -0.3
299,052 - -0.8
299,052 - -0.0
299,052 - -2.0
299,058 + -1.0
299,058 + +0.2
299,058 + -0.0
299,058 + +0.1
299,058 + +0.7
299,059 - -0.6
299,059 - +2.3
299,059 - -0.0
299,059 - -1.8
299,059 - -0.2
299,097 + -0.4
299,098 - -0.2
299,158 - -0.5
299,158 - -0.2
299,158 - +0.1
299,512 + MPMX19_03032 0.17 -0.0
299,512 + MPMX19_03032 0.17 +0.2
299,512 + MPMX19_03032 0.17 -2.3
299,512 + MPMX19_03032 0.17 +1.2
299,512 + MPMX19_03032 0.17 -0.4
299,512 + MPMX19_03032 0.17 +0.3
299,512 + MPMX19_03032 0.17 +1.3
299,512 + MPMX19_03032 0.17 +0.5
299,512 + MPMX19_03032 0.17 +1.0
299,512 + MPMX19_03032 0.17 +0.3
299,512 + MPMX19_03032 0.17 -0.9
299,512 + MPMX19_03032 0.17 +0.6
299,512 + MPMX19_03032 0.17 +0.3
299,513 - MPMX19_03032 0.17 +0.3
299,513 - MPMX19_03032 0.17 +0.8
299,513 - MPMX19_03032 0.17 -1.1
299,513 - MPMX19_03032 0.17 -1.5
299,513 - MPMX19_03032 0.17 -1.0
299,513 - MPMX19_03032 0.17 -0.5
299,513 - MPMX19_03032 0.17 -0.8
299,513 - MPMX19_03032 0.17 +0.0
299,513 - MPMX19_03032 0.17 +0.2
299,513 - MPMX19_03032 0.17 +0.2
299,513 - MPMX19_03032 0.17 -0.2
299,524 + MPMX19_03032 0.18 -0.1
299,524 + MPMX19_03032 0.18 -0.4
299,524 + MPMX19_03032 0.18 -0.3
299,524 + MPMX19_03032 0.18 +0.9
299,524 + MPMX19_03032 0.18 +0.4
299,524 + MPMX19_03032 0.18 +1.6
299,524 + MPMX19_03032 0.18 -0.7
299,524 + MPMX19_03032 0.18 +1.6
299,524 + MPMX19_03032 0.18 -1.8
299,524 + MPMX19_03032 0.18 -0.0
299,524 + MPMX19_03032 0.18 -2.1
299,524 + MPMX19_03032 0.18 +0.5
299,525 - MPMX19_03032 0.18 -1.4
299,525 - MPMX19_03032 0.18 +1.1
299,525 - MPMX19_03032 0.18 -0.2
299,525 - MPMX19_03032 0.18 +0.6
299,525 - MPMX19_03032 0.18 +1.4
299,525 - MPMX19_03032 0.18 +0.2
299,525 - MPMX19_03032 0.18 -1.2
299,525 - MPMX19_03032 0.18 -0.6
299,525 - MPMX19_03032 0.18 +0.0
299,840 - MPMX19_03032 0.35 -1.2
299,991 - MPMX19_03032 0.43 -0.3
300,037 + MPMX19_03032 0.45 +0.4
300,037 + MPMX19_03032 0.45 +0.3
300,037 + MPMX19_03032 0.45 -1.4
300,037 + MPMX19_03032 0.45 -0.8
300,160 + MPMX19_03032 0.52 +1.1
300,160 + MPMX19_03032 0.52 -0.4
300,160 + MPMX19_03032 0.52 -0.0
300,160 + MPMX19_03032 0.52 +0.2
300,161 - MPMX19_03032 0.52 -1.5
300,161 - MPMX19_03032 0.52 -0.0
300,310 + MPMX19_03032 0.60 +0.2
300,310 + MPMX19_03032 0.60 -1.2
300,310 + MPMX19_03032 0.60 -0.8
300,310 + MPMX19_03032 0.60 -0.9
300,310 + MPMX19_03032 0.60 -1.0
300,311 - MPMX19_03032 0.60 -1.6
300,311 - MPMX19_03032 0.60 +0.9
300,311 - MPMX19_03032 0.60 -1.8
300,311 - MPMX19_03032 0.60 +0.7
300,311 - MPMX19_03032 0.60 -0.2
300,311 - MPMX19_03032 0.60 -0.1
300,311 - MPMX19_03032 0.60 -0.2
300,311 - MPMX19_03032 0.60 -1.1
300,430 + MPMX19_03032 0.67 +0.6
300,431 - MPMX19_03032 0.67 -1.3
300,454 + MPMX19_03032 0.68 -1.8
300,454 + MPMX19_03032 0.68 +1.6
300,454 + MPMX19_03032 0.68 +0.3
300,454 + MPMX19_03032 0.68 +0.6
300,454 + MPMX19_03032 0.68 -0.8
300,454 + MPMX19_03032 0.68 +0.3
300,454 + MPMX19_03032 0.68 +0.0
300,454 + MPMX19_03032 0.68 +0.3
300,454 + MPMX19_03032 0.68 -0.2
300,454 + MPMX19_03032 0.68 +0.2
300,454 + MPMX19_03032 0.68 -1.2
300,454 + MPMX19_03032 0.68 -0.2
300,454 + MPMX19_03032 0.68 +0.6
300,455 - MPMX19_03032 0.68 +0.1
300,455 - MPMX19_03032 0.68 +0.2
300,455 - MPMX19_03032 0.68 +0.4
300,455 - MPMX19_03032 0.68 -1.0
300,455 - MPMX19_03032 0.68 +0.1
300,455 - MPMX19_03032 0.68 -1.0
300,455 - MPMX19_03032 0.68 -0.7
300,455 - MPMX19_03032 0.68 +0.9
300,455 - MPMX19_03032 0.68 -0.2
300,455 - MPMX19_03032 0.68 -0.8
300,455 - MPMX19_03032 0.68 +0.4
300,800 - MPMX19_03032 0.87 +0.6
300,808 + MPMX19_03032 0.87 -0.1
300,808 + MPMX19_03032 0.87 -0.3
300,808 + MPMX19_03032 0.87 -1.3
300,808 + MPMX19_03032 0.87 -0.4
300,808 + MPMX19_03032 0.87 +1.0
300,808 + MPMX19_03032 0.87 -0.1
300,808 + MPMX19_03032 0.87 -0.8
300,808 + MPMX19_03032 0.87 -0.5
300,809 - MPMX19_03032 0.87 +1.6
300,809 - MPMX19_03032 0.87 -0.7
300,809 - MPMX19_03032 0.87 -0.1
300,809 - MPMX19_03032 0.87 +0.2
300,809 - MPMX19_03032 0.87 -0.2
300,809 - MPMX19_03032 0.87 +0.6
301,137 + +0.6
301,137 + +0.7
301,138 - -0.0
301,138 - -0.8
301,138 - -1.1
301,138 - +0.2
301,138 - -1.0
301,138 - -1.1
301,534 + MPMX19_03033 0.48 +1.0
301,534 + MPMX19_03033 0.48 +0.3
301,535 - MPMX19_03033 0.49 -0.8
301,549 + MPMX19_03033 0.50 -0.7
301,549 + MPMX19_03033 0.50 -0.3
301,550 - MPMX19_03033 0.50 -0.8
301,550 - MPMX19_03033 0.50 -2.2
301,550 - MPMX19_03033 0.50 -0.3
301,550 - MPMX19_03033 0.50 +1.4
301,732 + MPMX19_03033 0.68 +0.8
301,732 + MPMX19_03033 0.68 -0.3
301,733 - MPMX19_03033 0.68 +0.6
301,733 - MPMX19_03033 0.68 -0.2
301,733 - MPMX19_03033 0.68 -0.2
301,733 - MPMX19_03033 0.68 +0.3
301,733 - MPMX19_03033 0.68 -1.1
301,733 - MPMX19_03033 0.68 -0.5
301,733 - MPMX19_03033 0.68 -0.4
301,733 - MPMX19_03033 0.68 -1.4
301,880 - MPMX19_03033 0.83 -1.4
301,880 - MPMX19_03033 0.83 -0.8
301,880 - MPMX19_03033 0.83 -0.8
301,880 - MPMX19_03033 0.83 -2.0
301,880 - MPMX19_03033 0.83 -1.0
302,045 + -0.1

Or see this region's nucleotide sequence