Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03027

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03025 and MPMX19_03026 are separated by 47 nucleotidesMPMX19_03026 and MPMX19_03027 overlap by 4 nucleotidesMPMX19_03027 and MPMX19_03028 overlap by 1 nucleotides MPMX19_03025: MPMX19_03025 - hypothetical protein, at 290,417 to 291,538 _03025 MPMX19_03026: MPMX19_03026 - Fructose import ATP-binding protein FrcA, at 291,586 to 292,383 _03026 MPMX19_03027: MPMX19_03027 - Xylose transport system permease protein XylH, at 292,380 to 293,702 _03027 MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760 _03028 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 291.536 kb on + strandat 291.536 kb on + strandat 291.536 kb on + strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 292.100 kb on + strand, within MPMX19_03026at 292.100 kb on + strand, within MPMX19_03026at 292.100 kb on + strand, within MPMX19_03026at 292.101 kb on - strand, within MPMX19_03026at 292.101 kb on - strand, within MPMX19_03026at 292.193 kb on + strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.400 kb on - strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.415 kb on - strandat 292.415 kb on - strandat 292.415 kb on - strandat 292.415 kb on - strandat 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.591 kb on + strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.592 kb on - strand, within MPMX19_03027at 292.765 kb on + strand, within MPMX19_03027at 292.765 kb on + strand, within MPMX19_03027at 293.254 kb on + strand, within MPMX19_03027at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.408 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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291,536 + -0.7
291,536 + -0.3
291,536 + -0.8
291,537 - -0.6
291,537 - -1.6
291,537 - -0.4
291,537 - -0.8
291,537 - +0.3
291,537 - +0.8
291,537 - -1.0
292,100 + MPMX19_03026 0.64 -1.3
292,100 + MPMX19_03026 0.64 -0.2
292,100 + MPMX19_03026 0.64 -0.4
292,101 - MPMX19_03026 0.65 -0.6
292,101 - MPMX19_03026 0.65 -1.4
292,193 + MPMX19_03026 0.76 -0.0
292,194 - MPMX19_03026 0.76 -0.1
292,194 - MPMX19_03026 0.76 -0.3
292,194 - MPMX19_03026 0.76 -0.6
292,194 - MPMX19_03026 0.76 -0.5
292,271 + MPMX19_03026 0.86 +0.6
292,271 + MPMX19_03026 0.86 -1.0
292,271 + MPMX19_03026 0.86 +0.2
292,400 - -1.9
292,414 + -1.3
292,414 + -0.0
292,414 + -0.7
292,414 + -0.8
292,415 - -1.2
292,415 - +0.7
292,415 - +0.2
292,415 - +0.6
292,591 + MPMX19_03027 0.16 +0.4
292,591 + MPMX19_03027 0.16 -0.7
292,591 + MPMX19_03027 0.16 -0.2
292,591 + MPMX19_03027 0.16 -0.8
292,591 + MPMX19_03027 0.16 -0.7
292,591 + MPMX19_03027 0.16 +0.0
292,591 + MPMX19_03027 0.16 +0.2
292,591 + MPMX19_03027 0.16 -0.6
292,591 + MPMX19_03027 0.16 -0.2
292,591 + MPMX19_03027 0.16 +0.1
292,591 + MPMX19_03027 0.16 -1.0
292,591 + MPMX19_03027 0.16 +0.2
292,591 + MPMX19_03027 0.16 -1.0
292,591 + MPMX19_03027 0.16 +0.7
292,591 + MPMX19_03027 0.16 +1.2
292,591 + MPMX19_03027 0.16 -0.9
292,592 - MPMX19_03027 0.16 -0.4
292,592 - MPMX19_03027 0.16 -0.3
292,592 - MPMX19_03027 0.16 +1.0
292,592 - MPMX19_03027 0.16 +1.1
292,592 - MPMX19_03027 0.16 -0.0
292,592 - MPMX19_03027 0.16 +0.4
292,592 - MPMX19_03027 0.16 +0.9
292,592 - MPMX19_03027 0.16 -0.1
292,592 - MPMX19_03027 0.16 +0.6
292,592 - MPMX19_03027 0.16 -1.3
292,592 - MPMX19_03027 0.16 -0.6
292,592 - MPMX19_03027 0.16 +0.3
292,592 - MPMX19_03027 0.16 -0.4
292,592 - MPMX19_03027 0.16 +1.8
292,592 - MPMX19_03027 0.16 -0.4
292,592 - MPMX19_03027 0.16 +0.4
292,592 - MPMX19_03027 0.16 +0.3
292,765 + MPMX19_03027 0.29 +0.3
292,765 + MPMX19_03027 0.29 -0.2
293,254 + MPMX19_03027 0.66 +0.1
294,183 + MPMX19_03028 0.45 -0.7
294,183 + MPMX19_03028 0.45 -0.0
294,183 + MPMX19_03028 0.45 -0.8
294,184 - MPMX19_03028 0.46 -1.1
294,184 - MPMX19_03028 0.46 -1.0
294,184 - MPMX19_03028 0.46 +1.0
294,184 - MPMX19_03028 0.46 -0.4
294,300 + MPMX19_03028 0.56 +0.2
294,300 + MPMX19_03028 0.56 -0.4
294,300 + MPMX19_03028 0.56 +0.6
294,300 + MPMX19_03028 0.56 -0.2
294,300 + MPMX19_03028 0.56 +0.6
294,300 + MPMX19_03028 0.56 -1.0
294,300 + MPMX19_03028 0.56 +0.6
294,301 - MPMX19_03028 0.57 +0.1
294,301 - MPMX19_03028 0.57 -0.1
294,301 - MPMX19_03028 0.57 -0.8
294,301 - MPMX19_03028 0.57 -1.6
294,301 - MPMX19_03028 0.57 -0.2
294,301 - MPMX19_03028 0.57 +0.7
294,301 - MPMX19_03028 0.57 -1.2
294,301 - MPMX19_03028 0.57 +0.6
294,301 - MPMX19_03028 0.57 -0.0
294,301 - MPMX19_03028 0.57 +2.1
294,375 + MPMX19_03028 0.64 -1.2
294,375 + MPMX19_03028 0.64 -0.8
294,375 + MPMX19_03028 0.64 -1.6
294,375 + MPMX19_03028 0.64 +0.6
294,375 + MPMX19_03028 0.64 -1.6
294,375 + MPMX19_03028 0.64 -0.6
294,375 + MPMX19_03028 0.64 -1.0
294,376 - MPMX19_03028 0.64 -1.4
294,376 - MPMX19_03028 0.64 +0.4
294,376 - MPMX19_03028 0.64 +1.6
294,376 - MPMX19_03028 0.64 -0.2
294,376 - MPMX19_03028 0.64 -0.4
294,376 - MPMX19_03028 0.64 +1.1
294,376 - MPMX19_03028 0.64 +1.1
294,376 - MPMX19_03028 0.64 -2.4
294,376 - MPMX19_03028 0.64 -0.5
294,376 - MPMX19_03028 0.64 -2.1
294,408 + MPMX19_03028 0.67 -0.6
294,570 + MPMX19_03028 0.82 -0.3
294,570 + MPMX19_03028 0.82 -1.4
294,570 + MPMX19_03028 0.82 +0.5
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 +0.6
294,570 + MPMX19_03028 0.82 -0.3
294,570 + MPMX19_03028 0.82 +0.7
294,570 + MPMX19_03028 0.82 -0.3
294,570 + MPMX19_03028 0.82 -0.6
294,570 + MPMX19_03028 0.82 +0.3
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 -0.7
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 -0.7
294,570 + MPMX19_03028 0.82 -0.4
294,570 + MPMX19_03028 0.82 -1.0
294,571 - MPMX19_03028 0.82 -0.0
294,571 - MPMX19_03028 0.82 -0.8
294,571 - MPMX19_03028 0.82 +1.6
294,571 - MPMX19_03028 0.82 +0.2
294,571 - MPMX19_03028 0.82 -1.3
294,571 - MPMX19_03028 0.82 -0.0
294,571 - MPMX19_03028 0.82 -1.0
294,571 - MPMX19_03028 0.82 -1.4
294,571 - MPMX19_03028 0.82 -0.7
294,697 + -0.2
294,697 + +0.1
294,697 + +0.2
294,697 + +0.3
294,698 - -1.3
294,698 - +0.6
294,698 - -0.4
294,698 - -0.8
294,698 - -0.0
294,698 - -0.8

Or see this region's nucleotide sequence