Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01723 and MPMX19_01724 are separated by 163 nucleotides MPMX19_01724 and MPMX19_01725 are separated by 155 nucleotides MPMX19_01725 and MPMX19_01726 are separated by 17 nucleotides
MPMX19_01723: MPMX19_01723 - Lipoprotein-releasing system transmembrane protein LolC, at 1,814,509 to 1,815,756
_01723
MPMX19_01724: MPMX19_01724 - Proline--tRNA ligase, at 1,815,920 to 1,817,233
_01724
MPMX19_01725: MPMX19_01725 - hypothetical protein, at 1,817,389 to 1,817,865
_01725
MPMX19_01726: MPMX19_01726 - hypothetical protein, at 1,817,883 to 1,818,782
_01726
Position (kb) 1815
1816
1817
1818 Strain fitness (log2 ratio) -2
-1
0
1 at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.808 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.812 kb on - strand at 1815.913 kb on - strand at 1815.913 kb on - strand at 1817.326 kb on - strand at 1817.326 kb on - strand at 1817.326 kb on - strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.353 kb on + strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.354 kb on - strand at 1817.390 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.405 kb on + strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.406 kb on - strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.411 kb on + strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.412 kb on - strand at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.456 kb on + strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.457 kb on - strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.510 kb on + strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.511 kb on - strand, within MPMX19_01725 at 1817.935 kb on + strand at 1817.935 kb on + strand at 1817.935 kb on + strand at 1817.935 kb on + strand at 1817.936 kb on - strand at 1817.936 kb on - strand at 1817.936 kb on - strand at 1817.947 kb on + strand at 1817.947 kb on + strand at 1817.947 kb on + strand at 1817.947 kb on + strand at 1817.947 kb on + strand at 1817.947 kb on + strand at 1817.948 kb on - strand at 1817.948 kb on - strand at 1817.948 kb on - strand at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.998 kb on + strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1817.999 kb on - strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.085 kb on + strand, within MPMX19_01726 at 1818.086 kb on - strand, within MPMX19_01726 at 1818.086 kb on - strand, within MPMX19_01726 at 1818.086 kb on - strand, within MPMX19_01726 at 1818.086 kb on - strand, within MPMX19_01726 at 1818.149 kb on - strand, within MPMX19_01726 at 1818.149 kb on - strand, within MPMX19_01726 at 1818.167 kb on - strand, within MPMX19_01726 at 1818.167 kb on - strand, within MPMX19_01726 at 1818.167 kb on - strand, within MPMX19_01726
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 1,815,808 - +0.5 1,815,808 - +0.9 1,815,808 - +0.4 1,815,808 - -1.1 1,815,808 - -1.5 1,815,808 - +0.8 1,815,808 - -0.3 1,815,808 - -1.0 1,815,808 - -0.4 1,815,808 - +0.9 1,815,808 - -0.2 1,815,808 - -0.3 1,815,808 - +1.3 1,815,808 - -0.6 1,815,808 - +0.2 1,815,808 - -1.9 1,815,812 - -1.0 1,815,812 - -0.6 1,815,812 - -1.0 1,815,812 - -0.2 1,815,812 - -1.3 1,815,812 - -0.1 1,815,812 - -1.5 1,815,812 - +0.4 1,815,812 - +1.5 1,815,812 - +0.1 1,815,812 - -1.5 1,815,812 - -0.9 1,815,812 - -1.8 1,815,812 - -0.7 1,815,812 - +0.1 1,815,812 - +1.1 1,815,812 - +1.0 1,815,812 - -0.9 1,815,812 - -0.3 1,815,812 - +0.8 1,815,812 - -0.2 1,815,812 - -0.0 1,815,812 - +0.6 1,815,812 - -0.3 1,815,812 - +0.1 1,815,812 - +0.0 1,815,812 - -0.6 1,815,812 - -0.2 1,815,812 - -1.6 1,815,913 - +1.0 1,815,913 - -0.1 1,817,326 - +1.3 1,817,326 - -0.1 1,817,326 - +0.9 1,817,353 + +0.9 1,817,353 + -0.4 1,817,353 + -0.2 1,817,353 + -2.5 1,817,353 + +0.2 1,817,353 + -0.2 1,817,353 + -0.7 1,817,353 + -0.3 1,817,353 + -1.9 1,817,353 + -0.0 1,817,353 + +0.8 1,817,353 + -1.5 1,817,353 + -0.1 1,817,353 + -0.6 1,817,353 + +0.1 1,817,353 + -0.2 1,817,353 + -0.5 1,817,353 + +0.8 1,817,353 + +0.6 1,817,353 + -0.3 1,817,353 + -0.6 1,817,353 + +0.6 1,817,353 + -2.1 1,817,353 + -2.2 1,817,353 + +0.1 1,817,353 + +0.5 1,817,353 + +0.1 1,817,354 - +0.8 1,817,354 - +0.4 1,817,354 - +0.4 1,817,354 - -1.2 1,817,354 - +0.3 1,817,354 - -0.7 1,817,354 - +0.2 1,817,354 - -1.4 1,817,354 - -0.6 1,817,354 - +1.1 1,817,354 - +0.1 1,817,354 - +0.2 1,817,354 - -1.9 1,817,390 + +0.7 1,817,405 + +0.7 1,817,405 + -1.5 1,817,405 + +1.7 1,817,405 + +0.8 1,817,405 + -0.8 1,817,405 + -0.7 1,817,405 + +0.1 1,817,405 + -0.9 1,817,405 + -1.2 1,817,405 + -0.8 1,817,406 - -0.2 1,817,406 - -0.1 1,817,406 - -0.1 1,817,406 - -2.1 1,817,406 - -1.1 1,817,406 - +0.8 1,817,406 - +0.2 1,817,406 - -0.1 1,817,411 + +0.2 1,817,411 + +0.4 1,817,411 + -1.6 1,817,411 + -1.6 1,817,411 + +0.2 1,817,411 + -0.6 1,817,411 + +1.4 1,817,411 + +0.5 1,817,411 + +0.2 1,817,412 - +0.5 1,817,412 - -2.4 1,817,412 - +0.1 1,817,412 - -2.4 1,817,412 - -2.7 1,817,412 - -0.1 1,817,412 - +0.9 1,817,456 + MPMX19_01725 0.14 +0.9 1,817,456 + MPMX19_01725 0.14 -0.8 1,817,456 + MPMX19_01725 0.14 -0.4 1,817,456 + MPMX19_01725 0.14 +0.0 1,817,456 + MPMX19_01725 0.14 +0.8 1,817,456 + MPMX19_01725 0.14 -0.1 1,817,456 + MPMX19_01725 0.14 -1.5 1,817,456 + MPMX19_01725 0.14 +0.3 1,817,456 + MPMX19_01725 0.14 -1.1 1,817,456 + MPMX19_01725 0.14 -0.1 1,817,456 + MPMX19_01725 0.14 +0.5 1,817,457 - MPMX19_01725 0.14 +0.1 1,817,457 - MPMX19_01725 0.14 -0.9 1,817,457 - MPMX19_01725 0.14 +1.5 1,817,457 - MPMX19_01725 0.14 +0.2 1,817,457 - MPMX19_01725 0.14 -1.4 1,817,457 - MPMX19_01725 0.14 -1.4 1,817,510 + MPMX19_01725 0.25 -0.6 1,817,510 + MPMX19_01725 0.25 -1.4 1,817,510 + MPMX19_01725 0.25 +0.0 1,817,510 + MPMX19_01725 0.25 +1.2 1,817,510 + MPMX19_01725 0.25 +0.7 1,817,510 + MPMX19_01725 0.25 -0.5 1,817,511 - MPMX19_01725 0.26 +0.2 1,817,511 - MPMX19_01725 0.26 -0.3 1,817,511 - MPMX19_01725 0.26 +0.5 1,817,511 - MPMX19_01725 0.26 +0.4 1,817,511 - MPMX19_01725 0.26 +0.8 1,817,511 - MPMX19_01725 0.26 -0.3 1,817,511 - MPMX19_01725 0.26 -1.4 1,817,935 + -1.2 1,817,935 + -0.8 1,817,935 + +1.2 1,817,935 + -0.8 1,817,936 - +1.2 1,817,936 - +0.1 1,817,936 - -0.6 1,817,947 + -0.2 1,817,947 + -1.1 1,817,947 + +0.4 1,817,947 + -1.6 1,817,947 + -1.5 1,817,947 + -2.0 1,817,948 - -0.2 1,817,948 - -1.8 1,817,948 - +0.1 1,817,998 + MPMX19_01726 0.13 -0.3 1,817,998 + MPMX19_01726 0.13 -0.4 1,817,998 + MPMX19_01726 0.13 -0.4 1,817,998 + MPMX19_01726 0.13 -0.4 1,817,998 + MPMX19_01726 0.13 -1.6 1,817,998 + MPMX19_01726 0.13 +0.5 1,817,998 + MPMX19_01726 0.13 -1.5 1,817,998 + MPMX19_01726 0.13 +0.3 1,817,998 + MPMX19_01726 0.13 -0.8 1,817,998 + MPMX19_01726 0.13 +0.1 1,817,998 + MPMX19_01726 0.13 -0.3 1,817,998 + MPMX19_01726 0.13 -0.1 1,817,998 + MPMX19_01726 0.13 -1.9 1,817,998 + MPMX19_01726 0.13 -1.8 1,817,998 + MPMX19_01726 0.13 -0.9 1,817,999 - MPMX19_01726 0.13 +1.1 1,817,999 - MPMX19_01726 0.13 -1.3 1,817,999 - MPMX19_01726 0.13 -0.4 1,817,999 - MPMX19_01726 0.13 -0.5 1,817,999 - MPMX19_01726 0.13 -0.7 1,817,999 - MPMX19_01726 0.13 +0.5 1,817,999 - MPMX19_01726 0.13 -0.9 1,817,999 - MPMX19_01726 0.13 +0.4 1,817,999 - MPMX19_01726 0.13 -0.5 1,817,999 - MPMX19_01726 0.13 -0.8 1,817,999 - MPMX19_01726 0.13 +0.1 1,817,999 - MPMX19_01726 0.13 -1.1 1,817,999 - MPMX19_01726 0.13 -1.3 1,817,999 - MPMX19_01726 0.13 -2.3 1,817,999 - MPMX19_01726 0.13 -1.6 1,817,999 - MPMX19_01726 0.13 +0.5 1,817,999 - MPMX19_01726 0.13 +1.3 1,817,999 - MPMX19_01726 0.13 +1.2 1,817,999 - MPMX19_01726 0.13 -2.1 1,817,999 - MPMX19_01726 0.13 +0.1 1,817,999 - MPMX19_01726 0.13 -0.6 1,817,999 - MPMX19_01726 0.13 -1.4 1,817,999 - MPMX19_01726 0.13 -1.9 1,817,999 - MPMX19_01726 0.13 -0.5 1,817,999 - MPMX19_01726 0.13 +1.3 1,817,999 - MPMX19_01726 0.13 +0.4 1,818,085 + MPMX19_01726 0.22 +0.7 1,818,085 + MPMX19_01726 0.22 -0.8 1,818,085 + MPMX19_01726 0.22 -1.5 1,818,085 + MPMX19_01726 0.22 -0.6 1,818,085 + MPMX19_01726 0.22 -0.2 1,818,085 + MPMX19_01726 0.22 -0.6 1,818,085 + MPMX19_01726 0.22 +1.0 1,818,085 + MPMX19_01726 0.22 +0.4 1,818,085 + MPMX19_01726 0.22 -1.1 1,818,086 - MPMX19_01726 0.23 +0.2 1,818,086 - MPMX19_01726 0.23 -1.5 1,818,086 - MPMX19_01726 0.23 -0.5 1,818,086 - MPMX19_01726 0.23 -0.7 1,818,149 - MPMX19_01726 0.30 -0.5 1,818,149 - MPMX19_01726 0.30 -1.1 1,818,167 - MPMX19_01726 0.32 -0.2 1,818,167 - MPMX19_01726 0.32 -1.8 1,818,167 - MPMX19_01726 0.32 -0.6
Or see this region's nucleotide sequence