Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00654 and MPMX19_00655 are separated by 562 nucleotides MPMX19_00655 and MPMX19_00656 are separated by 39 nucleotides
MPMX19_00654: MPMX19_00654 - hypothetical protein, at 673,187 to 673,834
_00654
MPMX19_00655: MPMX19_00655 - hypothetical protein, at 674,397 to 675,704
_00655
MPMX19_00656: MPMX19_00656 - Sensor histidine kinase RcsC, at 675,744 to 677,462
_00656
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.557 kb on + strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.558 kb on - strand, within MPMX19_00654 at 673.575 kb on + strand, within MPMX19_00654 at 673.575 kb on + strand, within MPMX19_00654 at 673.575 kb on + strand, within MPMX19_00654 at 673.576 kb on - strand, within MPMX19_00654 at 673.576 kb on - strand, within MPMX19_00654 at 673.848 kb on + strand at 673.848 kb on + strand at 673.849 kb on - strand at 673.849 kb on - strand at 673.849 kb on - strand at 673.849 kb on - strand at 673.929 kb on + strand at 673.930 kb on - strand at 673.978 kb on + strand at 673.978 kb on + strand at 673.978 kb on + strand at 673.979 kb on - strand at 673.979 kb on - strand at 673.979 kb on - strand at 674.017 kb on + strand at 674.125 kb on + strand at 674.126 kb on - strand at 674.135 kb on + strand at 674.136 kb on - strand at 674.163 kb on + strand at 674.163 kb on + strand at 674.164 kb on - strand at 674.164 kb on - strand at 674.193 kb on + strand at 674.228 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.370 kb on + strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 674.371 kb on - strand at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.438 kb on + strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.439 kb on - strand, within MPMX19_00655 at 675.745 kb on + strand at 675.745 kb on + strand at 675.746 kb on - strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.877 kb on + strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 675.878 kb on - strand at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.300 kb on + strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656 at 676.301 kb on - strand, within MPMX19_00656
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 673,557 + MPMX19_00654 0.57 +0.2 673,557 + MPMX19_00654 0.57 -0.7 673,557 + MPMX19_00654 0.57 +0.2 673,557 + MPMX19_00654 0.57 +0.3 673,557 + MPMX19_00654 0.57 +1.9 673,557 + MPMX19_00654 0.57 -0.8 673,557 + MPMX19_00654 0.57 -1.8 673,557 + MPMX19_00654 0.57 -0.3 673,557 + MPMX19_00654 0.57 +2.8 673,557 + MPMX19_00654 0.57 +0.4 673,557 + MPMX19_00654 0.57 -1.7 673,557 + MPMX19_00654 0.57 -0.3 673,557 + MPMX19_00654 0.57 -0.8 673,557 + MPMX19_00654 0.57 -1.2 673,557 + MPMX19_00654 0.57 -0.6 673,557 + MPMX19_00654 0.57 +0.7 673,557 + MPMX19_00654 0.57 -1.7 673,557 + MPMX19_00654 0.57 -0.7 673,557 + MPMX19_00654 0.57 +0.3 673,557 + MPMX19_00654 0.57 -0.2 673,557 + MPMX19_00654 0.57 +0.8 673,557 + MPMX19_00654 0.57 -0.4 673,557 + MPMX19_00654 0.57 +0.5 673,557 + MPMX19_00654 0.57 +0.0 673,557 + MPMX19_00654 0.57 +0.7 673,558 - MPMX19_00654 0.57 -0.3 673,558 - MPMX19_00654 0.57 -0.1 673,558 - MPMX19_00654 0.57 +0.3 673,558 - MPMX19_00654 0.57 -0.7 673,558 - MPMX19_00654 0.57 +0.1 673,558 - MPMX19_00654 0.57 -0.7 673,558 - MPMX19_00654 0.57 -0.7 673,558 - MPMX19_00654 0.57 -0.8 673,558 - MPMX19_00654 0.57 +0.3 673,558 - MPMX19_00654 0.57 -0.6 673,558 - MPMX19_00654 0.57 -0.8 673,558 - MPMX19_00654 0.57 -0.2 673,558 - MPMX19_00654 0.57 -0.1 673,558 - MPMX19_00654 0.57 -0.8 673,558 - MPMX19_00654 0.57 -0.1 673,558 - MPMX19_00654 0.57 +0.6 673,558 - MPMX19_00654 0.57 +0.1 673,558 - MPMX19_00654 0.57 +0.2 673,558 - MPMX19_00654 0.57 -0.3 673,558 - MPMX19_00654 0.57 +0.8 673,558 - MPMX19_00654 0.57 +1.1 673,558 - MPMX19_00654 0.57 -1.3 673,558 - MPMX19_00654 0.57 +0.5 673,558 - MPMX19_00654 0.57 -0.1 673,558 - MPMX19_00654 0.57 -0.5 673,558 - MPMX19_00654 0.57 +1.9 673,558 - MPMX19_00654 0.57 -0.7 673,575 + MPMX19_00654 0.60 -0.5 673,575 + MPMX19_00654 0.60 -0.5 673,575 + MPMX19_00654 0.60 +1.2 673,576 - MPMX19_00654 0.60 -1.5 673,576 - MPMX19_00654 0.60 -1.7 673,848 + -0.2 673,848 + -0.5 673,849 - +0.8 673,849 - +0.1 673,849 - +1.3 673,849 - -1.1 673,929 + -1.6 673,930 - -1.5 673,978 + -0.2 673,978 + -0.1 673,978 + -0.7 673,979 - +1.2 673,979 - +0.2 673,979 - -1.5 674,017 + -1.0 674,125 + -1.1 674,126 - +1.1 674,135 + -1.8 674,136 - -1.2 674,163 + +0.3 674,163 + -0.9 674,164 - -2.2 674,164 - -3.1 674,193 + +0.1 674,228 + -1.2 674,370 + -1.5 674,370 + -1.6 674,370 + +0.4 674,370 + -0.0 674,370 + -0.2 674,370 + -0.7 674,370 + -0.1 674,370 + +1.2 674,370 + +0.2 674,370 + -1.7 674,371 - -1.7 674,371 - -1.5 674,371 - +0.3 674,371 - -0.9 674,371 - -0.7 674,371 - -0.3 674,371 - -0.4 674,371 - -0.5 675,438 + MPMX19_00655 0.80 -1.0 675,438 + MPMX19_00655 0.80 -0.7 675,438 + MPMX19_00655 0.80 -1.8 675,438 + MPMX19_00655 0.80 -1.5 675,438 + MPMX19_00655 0.80 -0.5 675,438 + MPMX19_00655 0.80 -2.0 675,439 - MPMX19_00655 0.80 -0.8 675,439 - MPMX19_00655 0.80 -0.1 675,439 - MPMX19_00655 0.80 -2.0 675,439 - MPMX19_00655 0.80 +0.3 675,439 - MPMX19_00655 0.80 -2.5 675,439 - MPMX19_00655 0.80 +0.5 675,439 - MPMX19_00655 0.80 -2.5 675,439 - MPMX19_00655 0.80 -2.1 675,439 - MPMX19_00655 0.80 +0.0 675,439 - MPMX19_00655 0.80 -0.1 675,439 - MPMX19_00655 0.80 -1.1 675,439 - MPMX19_00655 0.80 -2.6 675,439 - MPMX19_00655 0.80 -0.2 675,745 + -0.1 675,745 + -2.4 675,746 - -0.3 675,877 + -1.2 675,877 + +0.3 675,877 + -0.3 675,877 + -0.5 675,877 + -0.8 675,877 + -1.7 675,877 + -0.8 675,877 + +0.3 675,877 + +0.1 675,877 + -0.1 675,877 + -2.3 675,878 - -0.4 675,878 - -1.2 675,878 - -3.0 675,878 - -0.7 675,878 - -1.2 675,878 - -0.7 675,878 - +0.3 675,878 - -0.7 675,878 - -0.7 675,878 - +0.6 675,878 - -0.9 675,878 - -0.7 675,878 - -1.3 676,300 + MPMX19_00656 0.32 +0.5 676,300 + MPMX19_00656 0.32 -0.7 676,300 + MPMX19_00656 0.32 -1.8 676,300 + MPMX19_00656 0.32 -0.4 676,301 - MPMX19_00656 0.32 -0.8 676,301 - MPMX19_00656 0.32 +2.5 676,301 - MPMX19_00656 0.32 +1.2
Or see this region's nucleotide sequence