Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00570 and MPMX19_00571 are separated by 28 nucleotides MPMX19_00571 and MPMX19_00572 are separated by 155 nucleotides MPMX19_00572 and MPMX19_00573 are separated by 20 nucleotides
MPMX19_00570: MPMX19_00570 - L-Ala-D/L-Glu epimerase, at 585,580 to 586,572
_00570
MPMX19_00571: MPMX19_00571 - Putative pterin-4-alpha-carbinolamine dehydratase, at 586,601 to 587,011
_00571
MPMX19_00572: MPMX19_00572 - Type-4 uracil-DNA glycosylase, at 587,167 to 587,772
_00572
MPMX19_00573: MPMX19_00573 - hypothetical protein, at 587,793 to 588,452
_00573
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.727 kb on + strand, within MPMX19_00570 at 585.728 kb on - strand, within MPMX19_00570 at 585.736 kb on + strand, within MPMX19_00570 at 585.737 kb on - strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.570 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.761 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 587.055 kb on + strand at 587.055 kb on + strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.063 kb on + strand at 587.063 kb on + strand at 587.064 kb on - strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.548 kb on + strand, within MPMX19_00572 at 587.548 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.002 kb on - strand, within MPMX19_00573
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 585,727 + MPMX19_00570 0.15 +0.5 585,728 - MPMX19_00570 0.15 -0.5 585,736 + MPMX19_00570 0.16 -2.8 585,737 - MPMX19_00570 0.16 -1.6 585,955 + MPMX19_00570 0.38 +0.6 585,955 + MPMX19_00570 0.38 +0.4 585,955 + MPMX19_00570 0.38 +1.0 585,955 + MPMX19_00570 0.38 +0.1 585,955 + MPMX19_00570 0.38 -0.8 585,955 + MPMX19_00570 0.38 +0.1 585,955 + MPMX19_00570 0.38 -0.5 585,955 + MPMX19_00570 0.38 -0.1 585,955 + MPMX19_00570 0.38 -0.8 585,956 - MPMX19_00570 0.38 -2.5 585,956 - MPMX19_00570 0.38 -2.2 585,956 - MPMX19_00570 0.38 -0.5 585,956 - MPMX19_00570 0.38 -0.1 585,956 - MPMX19_00570 0.38 -0.9 586,306 + MPMX19_00570 0.73 +0.1 586,306 + MPMX19_00570 0.73 -1.5 586,307 - MPMX19_00570 0.73 -0.3 586,307 - MPMX19_00570 0.73 -0.9 586,468 + MPMX19_00570 0.89 +0.4 586,468 + MPMX19_00570 0.89 +0.5 586,468 + MPMX19_00570 0.89 +1.1 586,468 + MPMX19_00570 0.89 -0.6 586,468 + MPMX19_00570 0.89 -0.2 586,468 + MPMX19_00570 0.89 -0.2 586,468 + MPMX19_00570 0.89 +1.3 586,469 - MPMX19_00570 0.90 +1.2 586,469 - MPMX19_00570 0.90 +0.0 586,469 - MPMX19_00570 0.90 -1.4 586,469 - MPMX19_00570 0.90 +0.5 586,469 - MPMX19_00570 0.90 -0.5 586,469 - MPMX19_00570 0.90 +0.7 586,469 - MPMX19_00570 0.90 -1.0 586,469 - MPMX19_00570 0.90 -1.6 586,469 - MPMX19_00570 0.90 -0.4 586,469 - MPMX19_00570 0.90 -1.1 586,525 + -0.5 586,525 + +0.1 586,525 + -0.3 586,525 + -0.4 586,525 + -1.3 586,525 + -0.8 586,525 + -0.5 586,525 + +0.5 586,526 - -0.9 586,526 - +0.8 586,526 - -1.8 586,526 - -1.2 586,526 - -1.9 586,526 - -0.3 586,526 - -0.1 586,570 + +0.3 586,617 + -0.9 586,617 + -0.3 586,617 + -0.5 586,617 + -0.9 586,617 + -1.2 586,617 + +0.6 586,617 + -0.6 586,617 + -1.6 586,617 + -0.7 586,618 - -0.7 586,618 - -0.9 586,618 - -1.1 586,618 - -1.3 586,618 - +0.1 586,618 - -0.1 586,618 - -0.2 586,618 - -0.5 586,618 - -1.0 586,618 - +0.5 586,618 - -1.1 586,618 - -1.3 586,618 - -0.9 586,618 - -0.2 586,618 - +2.2 586,618 - -0.1 586,653 + MPMX19_00571 0.13 +1.8 586,653 + MPMX19_00571 0.13 -0.3 586,653 + MPMX19_00571 0.13 -0.0 586,653 + MPMX19_00571 0.13 -0.3 586,653 + MPMX19_00571 0.13 +1.5 586,653 + MPMX19_00571 0.13 +0.5 586,653 + MPMX19_00571 0.13 +0.2 586,653 + MPMX19_00571 0.13 -0.1 586,653 + MPMX19_00571 0.13 -1.0 586,653 + MPMX19_00571 0.13 -0.9 586,653 + MPMX19_00571 0.13 -0.3 586,653 + MPMX19_00571 0.13 -0.3 586,653 + MPMX19_00571 0.13 +1.2 586,653 + MPMX19_00571 0.13 -0.1 586,654 - MPMX19_00571 0.13 +1.2 586,654 - MPMX19_00571 0.13 -0.3 586,654 - MPMX19_00571 0.13 -0.7 586,654 - MPMX19_00571 0.13 +0.5 586,654 - MPMX19_00571 0.13 -0.2 586,654 - MPMX19_00571 0.13 -0.8 586,654 - MPMX19_00571 0.13 -1.6 586,654 - MPMX19_00571 0.13 -0.1 586,654 - MPMX19_00571 0.13 +0.1 586,654 - MPMX19_00571 0.13 +0.2 586,654 - MPMX19_00571 0.13 -0.9 586,654 - MPMX19_00571 0.13 +0.1 586,654 - MPMX19_00571 0.13 -0.3 586,654 - MPMX19_00571 0.13 +0.1 586,654 - MPMX19_00571 0.13 +0.7 586,654 - MPMX19_00571 0.13 +0.5 586,654 - MPMX19_00571 0.13 -0.1 586,654 - MPMX19_00571 0.13 +1.1 586,654 - MPMX19_00571 0.13 +1.5 586,654 - MPMX19_00571 0.13 +0.5 586,654 - MPMX19_00571 0.13 +0.2 586,761 + MPMX19_00571 0.39 -0.5 586,883 + MPMX19_00571 0.69 +1.5 586,883 + MPMX19_00571 0.69 -1.5 586,883 + MPMX19_00571 0.69 -1.0 586,883 + MPMX19_00571 0.69 -0.8 586,883 + MPMX19_00571 0.69 -1.3 586,883 + MPMX19_00571 0.69 -0.4 586,883 + MPMX19_00571 0.69 -1.9 586,883 + MPMX19_00571 0.69 +0.2 586,883 + MPMX19_00571 0.69 -1.2 586,884 - MPMX19_00571 0.69 -0.7 586,884 - MPMX19_00571 0.69 +0.3 586,884 - MPMX19_00571 0.69 -0.1 586,884 - MPMX19_00571 0.69 -1.8 586,884 - MPMX19_00571 0.69 +0.7 586,911 + MPMX19_00571 0.75 -0.2 586,911 + MPMX19_00571 0.75 +0.6 586,911 + MPMX19_00571 0.75 +0.5 586,911 + MPMX19_00571 0.75 -0.8 586,911 + MPMX19_00571 0.75 -0.4 586,912 - MPMX19_00571 0.76 +0.2 586,912 - MPMX19_00571 0.76 -1.6 586,912 - MPMX19_00571 0.76 +0.2 586,912 - MPMX19_00571 0.76 -1.3 587,055 + -1.9 587,055 + -0.8 587,056 - +0.2 587,056 - -0.3 587,056 - -0.4 587,056 - -1.1 587,056 - -0.7 587,056 - -0.4 587,063 + -0.2 587,063 + -0.1 587,064 - -0.7 587,070 + -0.8 587,070 + +0.5 587,070 + -1.3 587,070 + +1.0 587,070 + -0.3 587,070 + -0.2 587,071 - +0.1 587,071 - -0.9 587,071 - +0.4 587,203 + -1.1 587,203 + +0.9 587,203 + -0.8 587,203 + -1.8 587,204 - -0.1 587,204 - +0.5 587,204 - -0.7 587,204 - +1.5 587,204 - +0.6 587,548 + MPMX19_00572 0.63 +0.5 587,548 + MPMX19_00572 0.63 +0.2 587,692 + MPMX19_00572 0.87 -0.5 587,692 + MPMX19_00572 0.87 +0.3 587,692 + MPMX19_00572 0.87 +0.3 587,692 + MPMX19_00572 0.87 +0.7 587,692 + MPMX19_00572 0.87 -0.5 587,692 + MPMX19_00572 0.87 +0.8 587,692 + MPMX19_00572 0.87 +0.5 587,692 + MPMX19_00572 0.87 +0.9 587,692 + MPMX19_00572 0.87 -0.5 587,692 + MPMX19_00572 0.87 -1.7 587,692 + MPMX19_00572 0.87 -0.1 587,693 - MPMX19_00572 0.87 -0.5 587,693 - MPMX19_00572 0.87 -1.9 587,693 - MPMX19_00572 0.87 -1.6 587,693 - MPMX19_00572 0.87 +0.7 587,693 - MPMX19_00572 0.87 -1.3 587,693 - MPMX19_00572 0.87 -1.1 587,693 - MPMX19_00572 0.87 -0.1 587,693 - MPMX19_00572 0.87 -0.8 587,872 + MPMX19_00573 0.12 -1.0 587,872 + MPMX19_00573 0.12 -0.4 587,872 + MPMX19_00573 0.12 +0.4 587,872 + MPMX19_00573 0.12 +1.1 587,872 + MPMX19_00573 0.12 -1.5 587,872 + MPMX19_00573 0.12 +0.4 587,872 + MPMX19_00573 0.12 -0.2 587,873 - MPMX19_00573 0.12 +0.9 587,873 - MPMX19_00573 0.12 -0.9 587,873 - MPMX19_00573 0.12 -0.8 587,873 - MPMX19_00573 0.12 +0.3 587,873 - MPMX19_00573 0.12 -2.3 587,873 - MPMX19_00573 0.12 +0.6 587,873 - MPMX19_00573 0.12 -0.9 587,873 - MPMX19_00573 0.12 -1.1 587,908 + MPMX19_00573 0.17 +0.3 587,908 + MPMX19_00573 0.17 -0.1 587,908 + MPMX19_00573 0.17 -1.3 587,908 + MPMX19_00573 0.17 -0.3 587,908 + MPMX19_00573 0.17 +0.2 587,908 + MPMX19_00573 0.17 -1.9 587,908 + MPMX19_00573 0.17 +1.0 587,908 + MPMX19_00573 0.17 -0.6 587,909 - MPMX19_00573 0.18 +0.3 587,909 - MPMX19_00573 0.18 -1.8 587,909 - MPMX19_00573 0.18 -0.4 587,909 - MPMX19_00573 0.18 -1.5 588,001 + MPMX19_00573 0.32 -0.7 588,001 + MPMX19_00573 0.32 +0.0 588,001 + MPMX19_00573 0.32 -2.1 588,002 - MPMX19_00573 0.32 -0.6
Or see this region's nucleotide sequence