Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00563 and MPMX19_00564 are separated by 94 nucleotides MPMX19_00564 and MPMX19_00565 overlap by 4 nucleotides MPMX19_00565 and MPMX19_00566 are separated by 280 nucleotides
MPMX19_00563: MPMX19_00563 - Septum site-determining protein MinC, at 578,252 to 579,019
_00563
MPMX19_00564: MPMX19_00564 - Septum site-determining protein MinD, at 579,114 to 579,929
_00564
MPMX19_00565: MPMX19_00565 - Cell division topological specificity factor, at 579,926 to 580,297
_00565
MPMX19_00566: MPMX19_00566 - hypothetical protein, at 580,578 to 581,963
_00566
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 579.026 kb on + strand at 579.026 kb on + strand at 579.026 kb on + strand at 579.098 kb on + strand at 579.098 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.410 kb on + strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.411 kb on - strand at 580.440 kb on - strand at 580.440 kb on - strand at 580.461 kb on - strand at 580.461 kb on - strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.472 kb on + strand at 580.473 kb on - strand at 580.473 kb on - strand at 580.473 kb on - strand at 580.473 kb on - strand at 580.675 kb on + strand at 580.675 kb on + strand at 580.675 kb on + strand at 580.675 kb on + strand at 580.675 kb on + strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.676 kb on - strand at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.827 kb on + strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.828 kb on - strand, within MPMX19_00566 at 580.998 kb on + strand, within MPMX19_00566 at 580.998 kb on + strand, within MPMX19_00566 at 580.999 kb on - strand, within MPMX19_00566 at 581.040 kb on + strand, within MPMX19_00566 at 581.040 kb on + strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.041 kb on - strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.147 kb on + strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566 at 581.148 kb on - strand, within MPMX19_00566
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 579,026 + -0.5 579,026 + -0.5 579,026 + -0.5 579,098 + -1.3 579,098 + -1.9 580,410 + +0.2 580,410 + -0.4 580,410 + +0.1 580,410 + -1.5 580,410 + +0.5 580,410 + -1.9 580,410 + -0.5 580,410 + -0.5 580,410 + -1.7 580,410 + +1.3 580,410 + -0.7 580,410 + +1.1 580,410 + +1.3 580,410 + -0.3 580,410 + +0.4 580,410 + -2.3 580,410 + -2.2 580,410 + -0.4 580,410 + -1.2 580,410 + -1.7 580,411 - +0.3 580,411 - +1.9 580,411 - +2.0 580,411 - +0.6 580,411 - -0.7 580,411 - +0.2 580,411 - -0.2 580,411 - +0.5 580,411 - -0.9 580,411 - +0.0 580,411 - +0.4 580,411 - -0.3 580,411 - -1.1 580,411 - +0.7 580,411 - +1.0 580,411 - +0.5 580,411 - +0.2 580,440 - -0.3 580,440 - -0.8 580,461 - -0.6 580,461 - +1.8 580,472 + -0.3 580,472 + +0.5 580,472 + -0.7 580,472 + +0.5 580,472 + +0.3 580,472 + -1.2 580,472 + -0.9 580,472 + -0.2 580,472 + +0.1 580,472 + -0.5 580,473 - +0.5 580,473 - -1.8 580,473 - -0.5 580,473 - -1.0 580,675 + -0.3 580,675 + +2.3 580,675 + -1.1 580,675 + -0.7 580,675 + -1.8 580,676 - +0.4 580,676 - +0.6 580,676 - -1.4 580,676 - -2.0 580,676 - -1.1 580,676 - -1.5 580,676 - -0.1 580,676 - -1.1 580,827 + MPMX19_00566 0.18 -0.9 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 -1.3 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 -0.8 580,827 + MPMX19_00566 0.18 -1.0 580,827 + MPMX19_00566 0.18 -1.4 580,827 + MPMX19_00566 0.18 +0.3 580,827 + MPMX19_00566 0.18 +0.2 580,827 + MPMX19_00566 0.18 -0.4 580,827 + MPMX19_00566 0.18 +0.3 580,827 + MPMX19_00566 0.18 -0.8 580,827 + MPMX19_00566 0.18 -2.9 580,827 + MPMX19_00566 0.18 +1.1 580,827 + MPMX19_00566 0.18 -0.8 580,827 + MPMX19_00566 0.18 +2.4 580,827 + MPMX19_00566 0.18 +0.8 580,827 + MPMX19_00566 0.18 -1.0 580,827 + MPMX19_00566 0.18 +0.4 580,827 + MPMX19_00566 0.18 -0.5 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 -0.1 580,827 + MPMX19_00566 0.18 -1.5 580,827 + MPMX19_00566 0.18 +2.2 580,827 + MPMX19_00566 0.18 -1.9 580,827 + MPMX19_00566 0.18 -1.3 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 +1.3 580,827 + MPMX19_00566 0.18 -0.7 580,827 + MPMX19_00566 0.18 -2.4 580,827 + MPMX19_00566 0.18 -0.8 580,827 + MPMX19_00566 0.18 -0.3 580,827 + MPMX19_00566 0.18 -1.1 580,827 + MPMX19_00566 0.18 -0.4 580,827 + MPMX19_00566 0.18 -1.8 580,827 + MPMX19_00566 0.18 -0.7 580,827 + MPMX19_00566 0.18 -3.1 580,827 + MPMX19_00566 0.18 -0.2 580,827 + MPMX19_00566 0.18 +0.2 580,828 - MPMX19_00566 0.18 -2.7 580,828 - MPMX19_00566 0.18 -0.7 580,828 - MPMX19_00566 0.18 +0.0 580,828 - MPMX19_00566 0.18 -0.1 580,828 - MPMX19_00566 0.18 -0.1 580,828 - MPMX19_00566 0.18 -0.2 580,828 - MPMX19_00566 0.18 +0.3 580,828 - MPMX19_00566 0.18 -1.0 580,828 - MPMX19_00566 0.18 +0.5 580,828 - MPMX19_00566 0.18 -1.0 580,828 - MPMX19_00566 0.18 +0.9 580,828 - MPMX19_00566 0.18 +0.1 580,828 - MPMX19_00566 0.18 -0.7 580,828 - MPMX19_00566 0.18 -0.1 580,828 - MPMX19_00566 0.18 -3.2 580,828 - MPMX19_00566 0.18 +0.1 580,828 - MPMX19_00566 0.18 +0.8 580,828 - MPMX19_00566 0.18 -1.4 580,828 - MPMX19_00566 0.18 +0.3 580,828 - MPMX19_00566 0.18 -0.8 580,828 - MPMX19_00566 0.18 -0.9 580,828 - MPMX19_00566 0.18 -0.4 580,828 - MPMX19_00566 0.18 +1.5 580,828 - MPMX19_00566 0.18 -1.1 580,828 - MPMX19_00566 0.18 +0.5 580,828 - MPMX19_00566 0.18 -0.7 580,828 - MPMX19_00566 0.18 -0.3 580,828 - MPMX19_00566 0.18 -0.4 580,828 - MPMX19_00566 0.18 -1.3 580,828 - MPMX19_00566 0.18 +0.0 580,828 - MPMX19_00566 0.18 -0.1 580,828 - MPMX19_00566 0.18 -2.3 580,828 - MPMX19_00566 0.18 +0.3 580,828 - MPMX19_00566 0.18 +0.2 580,828 - MPMX19_00566 0.18 -0.3 580,828 - MPMX19_00566 0.18 -0.5 580,828 - MPMX19_00566 0.18 -1.1 580,828 - MPMX19_00566 0.18 +0.8 580,828 - MPMX19_00566 0.18 +1.1 580,828 - MPMX19_00566 0.18 +2.7 580,828 - MPMX19_00566 0.18 +1.5 580,828 - MPMX19_00566 0.18 -0.5 580,828 - MPMX19_00566 0.18 +0.1 580,828 - MPMX19_00566 0.18 +1.5 580,828 - MPMX19_00566 0.18 -1.1 580,828 - MPMX19_00566 0.18 -1.5 580,998 + MPMX19_00566 0.30 +0.5 580,998 + MPMX19_00566 0.30 +0.4 580,999 - MPMX19_00566 0.30 -0.4 581,040 + MPMX19_00566 0.33 -0.9 581,040 + MPMX19_00566 0.33 -0.4 581,041 - MPMX19_00566 0.33 -0.2 581,041 - MPMX19_00566 0.33 -0.9 581,041 - MPMX19_00566 0.33 -0.1 581,041 - MPMX19_00566 0.33 +0.4 581,041 - MPMX19_00566 0.33 +0.1 581,041 - MPMX19_00566 0.33 -0.5 581,041 - MPMX19_00566 0.33 -0.1 581,147 + MPMX19_00566 0.41 +0.0 581,147 + MPMX19_00566 0.41 +0.3 581,147 + MPMX19_00566 0.41 -0.0 581,147 + MPMX19_00566 0.41 +0.0 581,147 + MPMX19_00566 0.41 -1.1 581,147 + MPMX19_00566 0.41 -2.5 581,147 + MPMX19_00566 0.41 +0.4 581,147 + MPMX19_00566 0.41 +1.0 581,147 + MPMX19_00566 0.41 +1.2 581,147 + MPMX19_00566 0.41 +0.2 581,147 + MPMX19_00566 0.41 +1.3 581,147 + MPMX19_00566 0.41 -0.3 581,147 + MPMX19_00566 0.41 -0.1 581,148 - MPMX19_00566 0.41 +0.3 581,148 - MPMX19_00566 0.41 +0.5 581,148 - MPMX19_00566 0.41 -0.4 581,148 - MPMX19_00566 0.41 -0.8 581,148 - MPMX19_00566 0.41 -0.7 581,148 - MPMX19_00566 0.41 +0.1 581,148 - MPMX19_00566 0.41 -0.1 581,148 - MPMX19_00566 0.41 -0.7 581,148 - MPMX19_00566 0.41 -1.2 581,148 - MPMX19_00566 0.41 -1.8 581,148 - MPMX19_00566 0.41 +1.4
Or see this region's nucleotide sequence