Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00509 and MPMX19_00510 are separated by 33 nucleotides MPMX19_00510 and MPMX19_00511 are separated by 85 nucleotides MPMX19_00511 and MPMX19_00512 are separated by 143 nucleotides
MPMX19_00509: MPMX19_00509 - hypothetical protein, at 512,367 to 513,632
_00509
MPMX19_00510: MPMX19_00510 - Sensor histidine kinase RcsC, at 513,666 to 514,433
_00510
MPMX19_00511: MPMX19_00511 - hypothetical protein, at 514,519 to 515,010
_00511
MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764
_00512
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 513.522 kb on + strand at 513.522 kb on + strand at 513.522 kb on + strand at 513.523 kb on - strand at 513.523 kb on - strand at 513.630 kb on + strand at 513.630 kb on + strand at 513.631 kb on - strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.662 kb on + strand at 513.663 kb on - strand at 513.663 kb on - strand at 513.663 kb on - strand at 513.663 kb on - strand at 513.667 kb on + strand at 513.667 kb on + strand at 513.667 kb on + strand at 513.668 kb on - strand at 513.752 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.820 kb on + strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.821 kb on - strand, within MPMX19_00510 at 513.845 kb on + strand, within MPMX19_00510 at 513.845 kb on + strand, within MPMX19_00510 at 513.845 kb on + strand, within MPMX19_00510 at 513.845 kb on + strand, within MPMX19_00510 at 513.845 kb on + strand, within MPMX19_00510 at 513.846 kb on - strand, within MPMX19_00510 at 513.846 kb on - strand, within MPMX19_00510 at 513.846 kb on - strand, within MPMX19_00510 at 513.846 kb on - strand, within MPMX19_00510 at 513.846 kb on - strand, within MPMX19_00510 at 514.473 kb on + strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.543 kb on - strand at 514.667 kb on + strand, within MPMX19_00511 at 514.668 kb on - strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.764 kb on - strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.902 kb on - strand, within MPMX19_00511 at 515.042 kb on + strand at 515.042 kb on + strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.581 kb on - strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.974 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 513,522 + +0.2 513,522 + +0.5 513,522 + +0.9 513,523 - +0.1 513,523 - -0.6 513,630 + +1.3 513,630 + -2.1 513,631 - -0.7 513,662 + -0.2 513,662 + +0.9 513,662 + +0.1 513,662 + +0.6 513,662 + -1.7 513,662 + +0.4 513,662 + -1.5 513,663 - -1.9 513,663 - -1.7 513,663 - -0.1 513,663 - -1.3 513,667 + -1.1 513,667 + -1.8 513,667 + -0.7 513,668 - -0.5 513,752 + MPMX19_00510 0.11 -0.7 513,820 + MPMX19_00510 0.20 -0.9 513,820 + MPMX19_00510 0.20 +0.5 513,820 + MPMX19_00510 0.20 +0.5 513,820 + MPMX19_00510 0.20 -2.3 513,820 + MPMX19_00510 0.20 -0.7 513,820 + MPMX19_00510 0.20 +0.1 513,820 + MPMX19_00510 0.20 -0.7 513,821 - MPMX19_00510 0.20 -0.4 513,821 - MPMX19_00510 0.20 -0.7 513,821 - MPMX19_00510 0.20 -0.7 513,821 - MPMX19_00510 0.20 -0.8 513,821 - MPMX19_00510 0.20 -1.1 513,821 - MPMX19_00510 0.20 -0.5 513,845 + MPMX19_00510 0.23 -1.3 513,845 + MPMX19_00510 0.23 -0.2 513,845 + MPMX19_00510 0.23 -0.5 513,845 + MPMX19_00510 0.23 +0.2 513,845 + MPMX19_00510 0.23 -0.2 513,846 - MPMX19_00510 0.23 +0.9 513,846 - MPMX19_00510 0.23 -1.5 513,846 - MPMX19_00510 0.23 +0.6 513,846 - MPMX19_00510 0.23 -0.1 513,846 - MPMX19_00510 0.23 +0.4 514,473 + -1.3 514,474 - +1.1 514,474 - +0.2 514,474 - +0.2 514,543 - +0.1 514,667 + MPMX19_00511 0.30 +0.2 514,668 - MPMX19_00511 0.30 -0.7 514,739 + MPMX19_00511 0.45 -2.1 514,739 + MPMX19_00511 0.45 -1.1 514,739 + MPMX19_00511 0.45 -2.1 514,739 + MPMX19_00511 0.45 -1.3 514,739 + MPMX19_00511 0.45 -3.3 514,739 + MPMX19_00511 0.45 -2.0 514,740 - MPMX19_00511 0.45 +0.0 514,740 - MPMX19_00511 0.45 -0.9 514,740 - MPMX19_00511 0.45 +0.5 514,740 - MPMX19_00511 0.45 -1.7 514,740 - MPMX19_00511 0.45 +0.1 514,763 + MPMX19_00511 0.50 -0.7 514,763 + MPMX19_00511 0.50 -1.1 514,763 + MPMX19_00511 0.50 +0.4 514,764 - MPMX19_00511 0.50 -0.2 514,901 + MPMX19_00511 0.78 +0.7 514,901 + MPMX19_00511 0.78 -1.5 514,902 - MPMX19_00511 0.78 -1.3 515,042 + -0.4 515,042 + +0.3 515,043 - -1.2 515,043 - -1.1 515,043 - +0.5 515,043 - -0.3 515,127 + -1.5 515,127 + -1.8 515,127 + -0.1 515,127 + +0.2 515,127 + -0.9 515,127 + -0.5 515,127 + +0.2 515,127 + -0.2 515,128 - -0.6 515,128 - +0.2 515,128 - -1.1 515,128 - -0.2 515,581 - MPMX19_00512 0.27 -1.0 515,773 + MPMX19_00512 0.38 -1.3 515,773 + MPMX19_00512 0.38 -1.6 515,773 + MPMX19_00512 0.38 -0.5 515,773 + MPMX19_00512 0.38 +1.1 515,773 + MPMX19_00512 0.38 +1.0 515,773 + MPMX19_00512 0.38 -0.2 515,773 + MPMX19_00512 0.38 -1.8 515,773 + MPMX19_00512 0.38 -2.7 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 +0.7 515,773 + MPMX19_00512 0.38 -0.5 515,773 + MPMX19_00512 0.38 +0.2 515,773 + MPMX19_00512 0.38 -1.7 515,773 + MPMX19_00512 0.38 -2.1 515,773 + MPMX19_00512 0.38 +0.9 515,773 + MPMX19_00512 0.38 -0.6 515,773 + MPMX19_00512 0.38 -0.7 515,773 + MPMX19_00512 0.38 -0.2 515,774 - MPMX19_00512 0.38 -0.7 515,774 - MPMX19_00512 0.38 -0.8 515,774 - MPMX19_00512 0.38 -0.3 515,774 - MPMX19_00512 0.38 -1.1 515,774 - MPMX19_00512 0.38 +0.9 515,774 - MPMX19_00512 0.38 +1.1 515,774 - MPMX19_00512 0.38 +0.5 515,774 - MPMX19_00512 0.38 -1.4 515,774 - MPMX19_00512 0.38 -0.6 515,774 - MPMX19_00512 0.38 +0.9 515,774 - MPMX19_00512 0.38 -0.5 515,774 - MPMX19_00512 0.38 +0.5 515,774 - MPMX19_00512 0.38 -1.3 515,774 - MPMX19_00512 0.38 +0.3 515,774 - MPMX19_00512 0.38 -0.2 515,774 - MPMX19_00512 0.38 -1.5 515,774 - MPMX19_00512 0.38 -0.8 515,774 - MPMX19_00512 0.38 +0.2 515,774 - MPMX19_00512 0.38 -0.1 515,774 - MPMX19_00512 0.38 -1.0 515,974 + MPMX19_00512 0.51 -0.5 515,998 + MPMX19_00512 0.52 -0.1 515,998 + MPMX19_00512 0.52 -2.1 515,998 + MPMX19_00512 0.52 -1.1 515,998 + MPMX19_00512 0.52 +0.9 515,998 + MPMX19_00512 0.52 -2.0 515,998 + MPMX19_00512 0.52 +0.7 515,999 - MPMX19_00512 0.52 -1.5 515,999 - MPMX19_00512 0.52 -0.9 515,999 - MPMX19_00512 0.52 -1.2 515,999 - MPMX19_00512 0.52 -0.3 515,999 - MPMX19_00512 0.52 +0.4 515,999 - MPMX19_00512 0.52 +0.6 515,999 - MPMX19_00512 0.52 +0.2 515,999 - MPMX19_00512 0.52 +0.9 515,999 - MPMX19_00512 0.52 -1.3 515,999 - MPMX19_00512 0.52 +0.3 515,999 - MPMX19_00512 0.52 -0.5 515,999 - MPMX19_00512 0.52 +0.0 516,009 + MPMX19_00512 0.53 -0.2 516,009 + MPMX19_00512 0.53 -0.7 516,009 + MPMX19_00512 0.53 -1.5 516,010 - MPMX19_00512 0.53 -0.2 516,010 - MPMX19_00512 0.53 +0.5 516,010 - MPMX19_00512 0.53 +1.1 516,010 - MPMX19_00512 0.53 +0.1 516,010 - MPMX19_00512 0.53 -0.7
Or see this region's nucleotide sequence