Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00213 and MPMX19_00214 are separated by 149 nucleotides MPMX19_00214 and MPMX19_00215 are separated by 176 nucleotides MPMX19_00215 and MPMX19_00216 are separated by 444 nucleotides MPMX19_00216 and MPMX19_00217 are separated by 49 nucleotides
MPMX19_00213: MPMX19_00213 - Heme A synthase, at 215,842 to 216,915
_00213
MPMX19_00214: MPMX19_00214 - hypothetical protein, at 217,065 to 217,559
_00214
MPMX19_00215: MPMX19_00215 - hypothetical protein, at 217,736 to 217,972
_00215
MPMX19_00216: MPMX19_00216 - 10 kDa chaperonin 1, at 218,417 to 218,707
_00216
MPMX19_00217: MPMX19_00217 - 60 kDa chaperonin 5, at 218,757 to 220,400
_00217
Position (kb) 217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.040 kb on - strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.453 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.622 kb on - strand at 217.738 kb on - strand at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 218.121 kb on + strand at 218.121 kb on + strand at 218.121 kb on + strand at 218.121 kb on + strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.231 kb on - strand at 218.244 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 217,040 - +0.3 217,052 + +2.6 217,052 + -0.2 217,052 + +0.0 217,052 + -0.3 217,052 + -0.1 217,052 + -0.1 217,052 + +0.8 217,052 + -0.4 217,052 + -0.4 217,052 + +0.6 217,052 + -0.4 217,052 + -0.8 217,052 + -0.6 217,052 + +0.2 217,052 + -0.4 217,052 + -2.0 217,053 - -0.8 217,053 - +0.9 217,053 - -1.7 217,053 - -0.4 217,053 - +0.2 217,053 - -0.8 217,053 - +0.1 217,053 - -1.5 217,053 - -1.1 217,053 - -1.7 217,053 - +1.1 217,053 - +0.2 217,053 - -1.8 217,053 - +0.2 217,053 - +2.3 217,053 - -1.6 217,053 - -0.4 217,053 - -1.6 217,053 - -0.4 217,053 - +0.8 217,053 - -0.5 217,060 + +0.5 217,060 + -0.4 217,060 + +0.2 217,060 + -0.1 217,060 + -0.8 217,060 + +0.4 217,060 + -1.1 217,060 + +0.9 217,060 + -0.9 217,060 + -0.7 217,060 + -0.3 217,060 + -0.1 217,060 + -1.5 217,060 + -0.1 217,060 + -0.0 217,060 + -0.2 217,060 + -1.9 217,060 + -0.4 217,060 + -0.5 217,060 + +0.3 217,060 + -0.8 217,060 + -0.7 217,060 + -1.8 217,060 + -1.2 217,060 + +0.0 217,060 + +0.0 217,060 + +0.3 217,060 + +0.9 217,060 + -0.5 217,060 + -0.3 217,060 + -2.1 217,060 + -0.4 217,060 + +0.4 217,060 + +0.2 217,061 - -0.5 217,061 - -1.3 217,061 - +0.2 217,061 - -1.4 217,061 - -0.3 217,061 - -1.1 217,061 - -1.5 217,061 - -0.4 217,061 - -2.4 217,061 - -0.8 217,061 - -1.8 217,061 - +0.1 217,061 - +0.6 217,061 - -1.7 217,061 - -0.1 217,061 - +1.4 217,061 - -0.7 217,061 - -0.8 217,061 - -0.8 217,061 - -1.0 217,061 - +0.6 217,061 - -0.4 217,061 - -0.5 217,061 - -0.7 217,061 - -0.4 217,061 - -0.2 217,061 - -1.4 217,061 - +0.0 217,061 - -0.5 217,061 - +0.5 217,061 - -0.6 217,061 - -0.1 217,061 - -1.0 217,061 - -0.0 217,061 - -1.0 217,061 - +1.0 217,061 - -0.0 217,061 - +0.3 217,061 - +0.4 217,061 - +0.2 217,195 + MPMX19_00214 0.26 -3.2 217,195 + MPMX19_00214 0.26 +0.3 217,195 + MPMX19_00214 0.26 -0.0 217,195 + MPMX19_00214 0.26 -0.9 217,195 + MPMX19_00214 0.26 -0.1 217,195 + MPMX19_00214 0.26 -0.4 217,195 + MPMX19_00214 0.26 -2.5 217,195 + MPMX19_00214 0.26 -1.4 217,195 + MPMX19_00214 0.26 +0.2 217,195 + MPMX19_00214 0.26 -0.3 217,195 + MPMX19_00214 0.26 -1.3 217,196 - MPMX19_00214 0.26 -0.2 217,196 - MPMX19_00214 0.26 +0.2 217,196 - MPMX19_00214 0.26 +0.3 217,196 - MPMX19_00214 0.26 -0.9 217,196 - MPMX19_00214 0.26 -1.8 217,196 - MPMX19_00214 0.26 +0.6 217,196 - MPMX19_00214 0.26 -0.8 217,196 - MPMX19_00214 0.26 -0.7 217,196 - MPMX19_00214 0.26 -0.5 217,196 - MPMX19_00214 0.26 -0.2 217,196 - MPMX19_00214 0.26 +0.2 217,231 + MPMX19_00214 0.34 -0.3 217,231 + MPMX19_00214 0.34 -1.3 217,231 + MPMX19_00214 0.34 -0.6 217,231 + MPMX19_00214 0.34 -0.6 217,231 + MPMX19_00214 0.34 +0.4 217,231 + MPMX19_00214 0.34 -0.2 217,231 + MPMX19_00214 0.34 -2.0 217,231 + MPMX19_00214 0.34 -0.6 217,231 + MPMX19_00214 0.34 -1.0 217,232 - MPMX19_00214 0.34 -0.3 217,232 - MPMX19_00214 0.34 +0.6 217,232 - MPMX19_00214 0.34 -1.4 217,232 - MPMX19_00214 0.34 +0.3 217,232 - MPMX19_00214 0.34 +0.5 217,232 - MPMX19_00214 0.34 -1.7 217,232 - MPMX19_00214 0.34 +0.2 217,232 - MPMX19_00214 0.34 -1.0 217,453 + MPMX19_00214 0.78 -2.8 217,486 + MPMX19_00214 0.85 +1.0 217,486 + MPMX19_00214 0.85 -0.8 217,486 + MPMX19_00214 0.85 -2.0 217,486 + MPMX19_00214 0.85 +0.3 217,486 + MPMX19_00214 0.85 -0.2 217,486 + MPMX19_00214 0.85 -1.0 217,486 + MPMX19_00214 0.85 -2.4 217,486 + MPMX19_00214 0.85 -0.7 217,486 + MPMX19_00214 0.85 -0.1 217,486 + MPMX19_00214 0.85 +1.4 217,486 + MPMX19_00214 0.85 -0.3 217,486 + MPMX19_00214 0.85 -1.2 217,486 + MPMX19_00214 0.85 -1.7 217,487 - MPMX19_00214 0.85 +0.4 217,487 - MPMX19_00214 0.85 -0.4 217,487 - MPMX19_00214 0.85 -0.4 217,487 - MPMX19_00214 0.85 -0.3 217,487 - MPMX19_00214 0.85 -1.1 217,487 - MPMX19_00214 0.85 -0.6 217,487 - MPMX19_00214 0.85 -1.7 217,487 - MPMX19_00214 0.85 -1.0 217,487 - MPMX19_00214 0.85 +0.0 217,487 - MPMX19_00214 0.85 -0.7 217,487 - MPMX19_00214 0.85 +0.0 217,487 - MPMX19_00214 0.85 -0.6 217,487 - MPMX19_00214 0.85 +0.5 217,487 - MPMX19_00214 0.85 +0.1 217,487 - MPMX19_00214 0.85 -0.2 217,498 + MPMX19_00214 0.87 +2.6 217,498 + MPMX19_00214 0.87 +1.0 217,498 + MPMX19_00214 0.87 -0.6 217,498 + MPMX19_00214 0.87 -0.7 217,498 + MPMX19_00214 0.87 -0.1 217,498 + MPMX19_00214 0.87 -1.5 217,498 + MPMX19_00214 0.87 -0.1 217,498 + MPMX19_00214 0.87 +1.0 217,498 + MPMX19_00214 0.87 +0.5 217,499 - MPMX19_00214 0.88 -2.0 217,499 - MPMX19_00214 0.88 -1.0 217,499 - MPMX19_00214 0.88 -1.4 217,499 - MPMX19_00214 0.88 -0.7 217,499 - MPMX19_00214 0.88 -0.3 217,622 - +0.3 217,738 - +0.2 217,911 + MPMX19_00215 0.74 -1.0 217,911 + MPMX19_00215 0.74 +0.6 217,911 + MPMX19_00215 0.74 -0.8 217,911 + MPMX19_00215 0.74 -0.6 217,911 + MPMX19_00215 0.74 -0.1 217,911 + MPMX19_00215 0.74 -1.5 217,911 + MPMX19_00215 0.74 +0.9 217,911 + MPMX19_00215 0.74 -0.8 217,911 + MPMX19_00215 0.74 -1.6 217,911 + MPMX19_00215 0.74 +0.1 217,911 + MPMX19_00215 0.74 +0.2 217,911 + MPMX19_00215 0.74 -0.5 217,911 + MPMX19_00215 0.74 -0.5 217,911 + MPMX19_00215 0.74 +0.4 217,911 + MPMX19_00215 0.74 -1.0 217,911 + MPMX19_00215 0.74 -1.3 217,911 + MPMX19_00215 0.74 -0.5 217,912 - MPMX19_00215 0.74 -0.8 217,912 - MPMX19_00215 0.74 -1.0 217,912 - MPMX19_00215 0.74 -2.2 217,912 - MPMX19_00215 0.74 -0.8 217,912 - MPMX19_00215 0.74 +0.6 217,912 - MPMX19_00215 0.74 -0.2 217,912 - MPMX19_00215 0.74 -0.5 217,912 - MPMX19_00215 0.74 +0.6 217,912 - MPMX19_00215 0.74 +0.0 217,912 - MPMX19_00215 0.74 -1.1 217,912 - MPMX19_00215 0.74 -1.7 217,912 - MPMX19_00215 0.74 +0.5 217,912 - MPMX19_00215 0.74 +2.0 217,912 - MPMX19_00215 0.74 -0.4 217,912 - MPMX19_00215 0.74 -0.1 217,912 - MPMX19_00215 0.74 -0.1 217,912 - MPMX19_00215 0.74 -0.6 217,912 - MPMX19_00215 0.74 -2.5 217,912 - MPMX19_00215 0.74 -1.2 218,121 + +1.6 218,121 + +0.9 218,121 + +0.2 218,121 + -1.0 218,122 - +0.2 218,122 - +0.2 218,122 - -0.5 218,122 - -0.9 218,122 - -0.2 218,122 - -1.2 218,122 - +0.2 218,122 - -0.8 218,231 - +0.0 218,244 + -0.2 218,325 + -0.5 218,325 + +0.0 218,325 + -0.9 218,325 + +0.0 218,356 + -0.8
Or see this region's nucleotide sequence