Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27340

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_27335 and HEPCGN_27340 are separated by 103 nucleotidesHEPCGN_27340 and HEPCGN_27345 are separated by 40 nucleotides HEPCGN_27335: HEPCGN_27335 - DUF2318 domain-containing protein, at 37,790 to 39,169 _27335 HEPCGN_27340: HEPCGN_27340 - 34 kDa membrane antigen, at 39,273 to 39,800 _27340 HEPCGN_27345: HEPCGN_27345 - High affinity Fe+2 binding protein permease component, at 39,841 to 41,781 _27345 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 38.368 kb on + strand, within HEPCGN_27335at 38.369 kb on - strand, within HEPCGN_27335at 38.369 kb on - strand, within HEPCGN_27335at 38.369 kb on - strand, within HEPCGN_27335at 38.569 kb on + strand, within HEPCGN_27335at 38.569 kb on + strand, within HEPCGN_27335at 38.569 kb on + strand, within HEPCGN_27335at 38.570 kb on - strand, within HEPCGN_27335at 38.571 kb on + strand, within HEPCGN_27335at 38.572 kb on - strand, within HEPCGN_27335at 38.572 kb on - strand, within HEPCGN_27335at 38.572 kb on - strand, within HEPCGN_27335at 38.639 kb on + strand, within HEPCGN_27335at 38.719 kb on - strand, within HEPCGN_27335at 38.756 kb on + strand, within HEPCGN_27335at 38.821 kb on + strand, within HEPCGN_27335at 38.822 kb on - strand, within HEPCGN_27335at 38.857 kb on + strand, within HEPCGN_27335at 38.963 kb on + strand, within HEPCGN_27335at 38.963 kb on + strand, within HEPCGN_27335at 39.016 kb on + strand, within HEPCGN_27335at 39.017 kb on - strand, within HEPCGN_27335at 39.077 kb on + strandat 39.169 kb on + strandat 39.199 kb on - strandat 39.211 kb on + strandat 39.211 kb on + strandat 39.212 kb on - strandat 39.212 kb on - strandat 39.274 kb on + strandat 39.274 kb on + strandat 39.289 kb on + strandat 39.289 kb on + strandat 39.289 kb on + strandat 39.394 kb on + strand, within HEPCGN_27340at 39.395 kb on - strand, within HEPCGN_27340at 39.395 kb on - strand, within HEPCGN_27340at 39.395 kb on - strand, within HEPCGN_27340at 39.404 kb on + strand, within HEPCGN_27340at 39.404 kb on + strand, within HEPCGN_27340at 39.404 kb on + strand, within HEPCGN_27340at 39.405 kb on - strand, within HEPCGN_27340at 39.405 kb on - strand, within HEPCGN_27340at 39.406 kb on + strand, within HEPCGN_27340at 39.406 kb on + strand, within HEPCGN_27340at 39.406 kb on + strand, within HEPCGN_27340at 39.407 kb on - strand, within HEPCGN_27340at 39.407 kb on - strand, within HEPCGN_27340at 39.407 kb on - strand, within HEPCGN_27340at 39.443 kb on - strand, within HEPCGN_27340at 39.520 kb on + strand, within HEPCGN_27340at 39.520 kb on + strand, within HEPCGN_27340at 39.521 kb on - strand, within HEPCGN_27340at 39.579 kb on + strand, within HEPCGN_27340at 39.580 kb on - strand, within HEPCGN_27340at 39.580 kb on - strand, within HEPCGN_27340at 39.650 kb on + strand, within HEPCGN_27340at 39.719 kb on - strand, within HEPCGN_27340at 39.719 kb on - strand, within HEPCGN_27340at 39.725 kb on + strand, within HEPCGN_27340at 39.726 kb on - strand, within HEPCGN_27340at 39.807 kb on + strandat 39.832 kb on - strandat 39.833 kb on + strandat 39.833 kb on + strandat 39.833 kb on + strandat 39.833 kb on + strandat 39.834 kb on - strandat 39.834 kb on - strandat 39.834 kb on - strandat 39.834 kb on - strandat 39.834 kb on - strandat 39.843 kb on - strandat 39.849 kb on + strandat 39.925 kb on + strandat 39.925 kb on + strandat 39.925 kb on + strandat 39.953 kb on + strandat 39.959 kb on + strandat 39.959 kb on + strandat 39.960 kb on - strandat 39.960 kb on - strandat 40.002 kb on + strandat 40.002 kb on + strandat 40.003 kb on - strandat 40.003 kb on - strandat 40.003 kb on - strandat 40.070 kb on + strand, within HEPCGN_27345at 40.071 kb on - strand, within HEPCGN_27345at 40.071 kb on - strand, within HEPCGN_27345at 40.093 kb on - strand, within HEPCGN_27345at 40.093 kb on - strand, within HEPCGN_27345at 40.093 kb on - strand, within HEPCGN_27345at 40.194 kb on + strand, within HEPCGN_27345at 40.195 kb on - strand, within HEPCGN_27345at 40.233 kb on - strand, within HEPCGN_27345at 40.235 kb on + strand, within HEPCGN_27345at 40.235 kb on + strand, within HEPCGN_27345at 40.235 kb on + strand, within HEPCGN_27345at 40.236 kb on - strand, within HEPCGN_27345at 40.236 kb on - strand, within HEPCGN_27345at 40.236 kb on - strand, within HEPCGN_27345at 40.291 kb on + strand, within HEPCGN_27345at 40.292 kb on - strand, within HEPCGN_27345at 40.392 kb on + strand, within HEPCGN_27345at 40.461 kb on + strand, within HEPCGN_27345at 40.461 kb on + strand, within HEPCGN_27345at 40.546 kb on - strand, within HEPCGN_27345at 40.571 kb on + strand, within HEPCGN_27345at 40.571 kb on + strand, within HEPCGN_27345at 40.571 kb on + strand, within HEPCGN_27345at 40.571 kb on + strand, within HEPCGN_27345at 40.572 kb on - strand, within HEPCGN_27345at 40.572 kb on - strand, within HEPCGN_27345at 40.572 kb on - strand, within HEPCGN_27345at 40.636 kb on - strand, within HEPCGN_27345at 40.636 kb on - strand, within HEPCGN_27345at 40.637 kb on + strand, within HEPCGN_27345at 40.637 kb on + strand, within HEPCGN_27345at 40.637 kb on + strand, within HEPCGN_27345at 40.638 kb on - strand, within HEPCGN_27345at 40.782 kb on - strand, within HEPCGN_27345

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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38,368 + HEPCGN_27335 0.42 -1.3
38,369 - HEPCGN_27335 0.42 -0.6
38,369 - HEPCGN_27335 0.42 +1.2
38,369 - HEPCGN_27335 0.42 +0.4
38,569 + HEPCGN_27335 0.56 -0.6
38,569 + HEPCGN_27335 0.56 +0.9
38,569 + HEPCGN_27335 0.56 +1.3
38,570 - HEPCGN_27335 0.57 +2.8
38,571 + HEPCGN_27335 0.57 +1.4
38,572 - HEPCGN_27335 0.57 +0.2
38,572 - HEPCGN_27335 0.57 -1.1
38,572 - HEPCGN_27335 0.57 -0.4
38,639 + HEPCGN_27335 0.62 +1.2
38,719 - HEPCGN_27335 0.67 -0.9
38,756 + HEPCGN_27335 0.70 +1.2
38,821 + HEPCGN_27335 0.75 -1.5
38,822 - HEPCGN_27335 0.75 +0.4
38,857 + HEPCGN_27335 0.77 +3.8
38,963 + HEPCGN_27335 0.85 -0.9
38,963 + HEPCGN_27335 0.85 -1.0
39,016 + HEPCGN_27335 0.89 +0.4
39,017 - HEPCGN_27335 0.89 -0.0
39,077 + -0.3
39,169 + +3.1
39,199 - +0.5
39,211 + +0.8
39,211 + -0.5
39,212 - +0.5
39,212 - +0.6
39,274 + +0.5
39,274 + -1.3
39,289 + -0.9
39,289 + +0.8
39,289 + -0.5
39,394 + HEPCGN_27340 0.23 +0.8
39,395 - HEPCGN_27340 0.23 -0.2
39,395 - HEPCGN_27340 0.23 +0.5
39,395 - HEPCGN_27340 0.23 +0.5
39,404 + HEPCGN_27340 0.25 +1.4
39,404 + HEPCGN_27340 0.25 -0.8
39,404 + HEPCGN_27340 0.25 +0.7
39,405 - HEPCGN_27340 0.25 -1.1
39,405 - HEPCGN_27340 0.25 -2.2
39,406 + HEPCGN_27340 0.25 +0.3
39,406 + HEPCGN_27340 0.25 -1.2
39,406 + HEPCGN_27340 0.25 -0.4
39,407 - HEPCGN_27340 0.25 -0.3
39,407 - HEPCGN_27340 0.25 -0.8
39,407 - HEPCGN_27340 0.25 +0.4
39,443 - HEPCGN_27340 0.32 +1.2
39,520 + HEPCGN_27340 0.47 -1.2
39,520 + HEPCGN_27340 0.47 -1.0
39,521 - HEPCGN_27340 0.47 -2.0
39,579 + HEPCGN_27340 0.58 +0.5
39,580 - HEPCGN_27340 0.58 -0.6
39,580 - HEPCGN_27340 0.58 +0.6
39,650 + HEPCGN_27340 0.71 -0.2
39,719 - HEPCGN_27340 0.84 +2.3
39,719 - HEPCGN_27340 0.84 +0.2
39,725 + HEPCGN_27340 0.86 +1.4
39,726 - HEPCGN_27340 0.86 +0.0
39,807 + +0.3
39,832 - -0.2
39,833 + +0.9
39,833 + +0.0
39,833 + +0.0
39,833 + -0.3
39,834 - +1.8
39,834 - -0.3
39,834 - +0.3
39,834 - +0.3
39,834 - -2.3
39,843 - +1.2
39,849 + +1.0
39,925 + -0.3
39,925 + -1.3
39,925 + -1.0
39,953 + +0.3
39,959 + -0.8
39,959 + -0.2
39,960 - -0.7
39,960 - -0.3
40,002 + +2.0
40,002 + +0.3
40,003 - -0.7
40,003 - -0.0
40,003 - -0.2
40,070 + HEPCGN_27345 0.12 +0.6
40,071 - HEPCGN_27345 0.12 +0.6
40,071 - HEPCGN_27345 0.12 -0.3
40,093 - HEPCGN_27345 0.13 -0.9
40,093 - HEPCGN_27345 0.13 -0.8
40,093 - HEPCGN_27345 0.13 -0.3
40,194 + HEPCGN_27345 0.18 -0.0
40,195 - HEPCGN_27345 0.18 +0.3
40,233 - HEPCGN_27345 0.20 +0.0
40,235 + HEPCGN_27345 0.20 -0.1
40,235 + HEPCGN_27345 0.20 +0.3
40,235 + HEPCGN_27345 0.20 +0.3
40,236 - HEPCGN_27345 0.20 -0.4
40,236 - HEPCGN_27345 0.20 -0.5
40,236 - HEPCGN_27345 0.20 -1.1
40,291 + HEPCGN_27345 0.23 -0.2
40,292 - HEPCGN_27345 0.23 -0.4
40,392 + HEPCGN_27345 0.28 +0.2
40,461 + HEPCGN_27345 0.32 +0.4
40,461 + HEPCGN_27345 0.32 -0.9
40,546 - HEPCGN_27345 0.36 +1.8
40,571 + HEPCGN_27345 0.38 -1.9
40,571 + HEPCGN_27345 0.38 -0.2
40,571 + HEPCGN_27345 0.38 +1.8
40,571 + HEPCGN_27345 0.38 +0.4
40,572 - HEPCGN_27345 0.38 +1.6
40,572 - HEPCGN_27345 0.38 +0.2
40,572 - HEPCGN_27345 0.38 +0.6
40,636 - HEPCGN_27345 0.41 -0.5
40,636 - HEPCGN_27345 0.41 +1.5
40,637 + HEPCGN_27345 0.41 -1.8
40,637 + HEPCGN_27345 0.41 +0.2
40,637 + HEPCGN_27345 0.41 +0.2
40,638 - HEPCGN_27345 0.41 -1.3
40,782 - HEPCGN_27345 0.48 -0.4

Or see this region's nucleotide sequence