Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22315

Experiment: Phi92

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phi92
3,221,007	+	glpT	HEPCGN_22310	0.27	+0.2
3,221,007	+	glpT	HEPCGN_22310	0.27	-0.3
3,221,008	-	glpT	HEPCGN_22310	0.28	-0.0
3,221,008	-	glpT	HEPCGN_22310	0.28	-0.7
3,221,065	+	glpT	HEPCGN_22310	0.32	-1.2
3,221,065	+	glpT	HEPCGN_22310	0.32	-1.0
3,221,065	+	glpT	HEPCGN_22310	0.32	-0.5
3,221,204	+	glpT	HEPCGN_22310	0.42	-0.1
3,221,205	-	glpT	HEPCGN_22310	0.42	-0.9
3,221,207	-	glpT	HEPCGN_22310	0.42	-2.3
3,221,207	-	glpT	HEPCGN_22310	0.42	-1.3
3,221,324	+	glpT	HEPCGN_22310	0.51	-0.2
3,221,375	+	glpT	HEPCGN_22310	0.55	+0.4
3,221,376	-	glpT	HEPCGN_22310	0.55	-0.5
3,221,531	+	glpT	HEPCGN_22310	0.66	-0.7
3,221,576	-	glpT	HEPCGN_22310	0.69	+0.2
3,221,576	-	glpT	HEPCGN_22310	0.69	-0.5
3,221,629	-	glpT	HEPCGN_22310	0.73	+2.6
3,221,679	+	glpT	HEPCGN_22310	0.77	-1.5
3,221,679	+	glpT	HEPCGN_22310	0.77	-0.2
3,221,679	+	glpT	HEPCGN_22310	0.77	-1.1
3,221,683	+	glpT	HEPCGN_22310	0.77	-2.0
3,221,692	+	glpT	HEPCGN_22310	0.78	+0.3
3,221,717	+	glpT	HEPCGN_22310	0.80	-0.7
3,221,717	+	glpT	HEPCGN_22310	0.80	+0.3
3,221,717	+	glpT	HEPCGN_22310	0.80	+1.6
3,221,717	+	glpT	HEPCGN_22310	0.80	-1.7
3,221,850	-	glpT	HEPCGN_22310	0.89	-0.4
3,221,884	+				-0.2
3,222,021	-				+1.6
3,222,021	-				+0.4
3,222,021	-				+0.5
3,222,135	-	glpQ	HEPCGN_22315	0.13	+1.3
3,222,135	-	glpQ	HEPCGN_22315	0.13	-1.0
3,222,159	+	glpQ	HEPCGN_22315	0.15	-0.3
3,222,237	+	glpQ	HEPCGN_22315	0.22	+0.4
3,222,238	-	glpQ	HEPCGN_22315	0.22	-1.4
3,222,238	-	glpQ	HEPCGN_22315	0.22	-1.3
3,222,303	+	glpQ	HEPCGN_22315	0.28	-0.1
3,222,469	+	glpQ	HEPCGN_22315	0.44	+0.1
3,222,491	+	glpQ	HEPCGN_22315	0.46	-2.1
3,222,548	+	glpQ	HEPCGN_22315	0.51	-0.2
3,222,588	+	glpQ	HEPCGN_22315	0.55	-1.4
3,222,613	-	glpQ	HEPCGN_22315	0.57	+0.7
3,222,647	+	glpQ	HEPCGN_22315	0.60	-0.5
3,222,669	-	glpQ	HEPCGN_22315	0.62	-0.2
3,222,762	+	glpQ	HEPCGN_22315	0.71	-1.0
3,222,768	+	glpQ	HEPCGN_22315	0.72	+0.3
3,222,813	+	glpQ	HEPCGN_22315	0.76	-1.6
3,222,813	+	glpQ	HEPCGN_22315	0.76	+0.5
3,222,814	-	glpQ	HEPCGN_22315	0.76	-0.2
3,222,825	-	glpQ	HEPCGN_22315	0.77	-0.8
3,222,825	-	glpQ	HEPCGN_22315	0.77	+1.7
3,222,842	+	glpQ	HEPCGN_22315	0.78	+1.3
3,222,842	+	glpQ	HEPCGN_22315	0.78	-0.3
3,222,842	+	glpQ	HEPCGN_22315	0.78	-0.4
3,222,872	+	glpQ	HEPCGN_22315	0.81	+0.4
3,222,933	+	glpQ	HEPCGN_22315	0.87	-0.4
3,222,986	-				+1.1
3,222,986	-				-0.1
3,222,988	-				-0.4
3,222,999	+				-2.1
3,223,000	-				+0.3
3,223,002	-				-0.2
3,223,052	-				-2.0
3,223,062	-				+0.3
3,223,064	+				-0.4
3,223,218	-	lysR	HEPCGN_22320	0.14	+0.2
3,223,218	-	lysR	HEPCGN_22320	0.14	-0.1
3,223,414	-	lysR	HEPCGN_22320	0.36	+2.8
3,223,452	+	lysR	HEPCGN_22320	0.40	+0.5
3,223,456	-	lysR	HEPCGN_22320	0.40	+0.0
3,223,496	-	lysR	HEPCGN_22320	0.45	+0.9
3,223,515	-	lysR	HEPCGN_22320	0.47	-1.1
3,223,605	+	lysR	HEPCGN_22320	0.57	+0.8
3,223,623	+	lysR	HEPCGN_22320	0.59	-0.5
3,223,798	-	lysR	HEPCGN_22320	0.78	-1.1
3,223,798	-	lysR	HEPCGN_22320	0.78	+0.6
3,223,827	+	lysR	HEPCGN_22320	0.82	+0.7
3,223,827	+	lysR	HEPCGN_22320	0.82	+0.6
3,223,855	-	lysR	HEPCGN_22320	0.85	+0.6
3,224,052	+				-1.2
3,224,053	-				+2.3
3,224,073	-				-1.2