Strain Fitness in Escherichia coli ECOR38 around HEPCGN_17090

Experiment: Phi92

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phi92
2,163,784	-	yraQ	HEPCGN_17085	0.15	+0.4
2,163,789	+	yraQ	HEPCGN_17085	0.15	-1.7
2,163,790	-	yraQ	HEPCGN_17085	0.15	+0.9
2,163,848	-	yraQ	HEPCGN_17085	0.21	+0.1
2,163,884	+	yraQ	HEPCGN_17085	0.24	-0.7
2,163,885	-	yraQ	HEPCGN_17085	0.24	-0.6
2,164,006	-	yraQ	HEPCGN_17085	0.36	+0.2
2,164,257	-	yraQ	HEPCGN_17085	0.60	-0.4
2,164,320	+	yraQ	HEPCGN_17085	0.66	-1.3
2,164,573	-				-1.8
2,164,700	+				+0.4
2,164,745	-				+0.9
2,164,773	+				-0.6
2,164,774	-				+0.5
2,164,789	+				-0.3
2,164,789	+				+0.1
2,164,807	+				+1.1
2,164,812	-				-0.6
2,165,009	-	dolP	HEPCGN_17090	0.39	-0.8
2,165,037	+	dolP	HEPCGN_17090	0.44	-0.4
2,165,038	-	dolP	HEPCGN_17090	0.44	+0.6
2,165,038	-	dolP	HEPCGN_17090	0.44	+0.3
2,165,216	-	dolP	HEPCGN_17090	0.75	+0.3
2,165,361	+				+0.4
2,165,361	+				+0.2
2,165,362	-				-0.5
2,165,362	-				+0.8
2,165,435	-	diaA	HEPCGN_17095	0.11	+0.5
2,165,435	-	diaA	HEPCGN_17095	0.11	-0.1
2,165,435	-	diaA	HEPCGN_17095	0.11	+0.2
2,165,459	-	diaA	HEPCGN_17095	0.15	-1.2
2,165,534	+	diaA	HEPCGN_17095	0.28	-0.3
2,165,582	+	diaA	HEPCGN_17095	0.36	+0.0
2,165,583	-	diaA	HEPCGN_17095	0.36	+0.5
2,165,624	+	diaA	HEPCGN_17095	0.43	+1.5
2,165,624	+	diaA	HEPCGN_17095	0.43	+0.8
2,165,624	+	diaA	HEPCGN_17095	0.43	-0.4
2,165,625	-	diaA	HEPCGN_17095	0.43	+0.8
2,165,625	-	diaA	HEPCGN_17095	0.43	+1.2
2,165,625	-	diaA	HEPCGN_17095	0.43	+0.8
2,165,678	+	diaA	HEPCGN_17095	0.52	+0.7
2,165,678	+	diaA	HEPCGN_17095	0.52	+0.5
2,165,679	-	diaA	HEPCGN_17095	0.52	+0.2
2,165,714	-	diaA	HEPCGN_17095	0.58	+0.5
2,165,724	-	diaA	HEPCGN_17095	0.60	+0.6
2,165,724	-	diaA	HEPCGN_17095	0.60	+0.1
2,165,738	+	diaA	HEPCGN_17095	0.62	-0.7
2,165,866	+	diaA	HEPCGN_17095	0.84	+0.3
2,165,866	+	diaA	HEPCGN_17095	0.84	+0.9
2,165,944	+				+0.3
2,165,969	+				+0.9
2,165,970	-				-0.4
2,165,977	-				-0.2
2,165,977	-				-0.1
2,165,981	-				-0.5
2,166,006	-				+0.9
2,166,077	+	yraN	HEPCGN_17100	0.25	-0.4
2,166,077	+	yraN	HEPCGN_17100	0.25	+1.1
2,166,112	-	yraN	HEPCGN_17100	0.34	+0.1
2,166,216	+	yraN	HEPCGN_17100	0.60	-1.2
2,166,333	+				-2.4
2,166,347	+				-1.0