Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15355

Experiment: Phi92

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phi92
1,830,660	+	uspA	HEPCGN_15345	0.60	+0.6
1,830,692	+	uspA	HEPCGN_15345	0.68	-0.1
1,830,693	-	uspA	HEPCGN_15345	0.68	-0.1
1,830,694	+	uspA	HEPCGN_15345	0.68	-0.6
1,830,695	-	uspA	HEPCGN_15345	0.69	+0.7
1,830,704	+	uspA	HEPCGN_15345	0.71	-0.6
1,830,709	+	uspA	HEPCGN_15345	0.72	+1.9
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.7
1,830,709	+	uspA	HEPCGN_15345	0.72	+0.1
1,830,709	+	uspA	HEPCGN_15345	0.72	+4.1
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.6
1,830,710	-	uspA	HEPCGN_15345	0.72	-0.6
1,830,715	+	uspA	HEPCGN_15345	0.73	+0.0
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.0
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.7
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.7
1,830,716	-	uspA	HEPCGN_15345	0.73	-0.4
1,830,756	+	uspA	HEPCGN_15345	0.83	-0.6
1,830,757	-	uspA	HEPCGN_15345	0.83	-1.4
1,830,823	-				-1.3
1,830,824	+				-0.5
1,830,824	+				-0.6
1,830,825	-				-0.1
1,830,831	+				+0.9
1,830,832	-				-0.7
1,830,837	+				-1.2
1,830,848	+				-0.9
1,830,873	-				+0.3
1,830,913	+				+0.5
1,830,914	-				-0.0
1,830,953	-				-0.3
1,830,964	+				+0.4
1,830,964	+				+0.6
1,830,965	-				+2.0
1,830,969	+				+0.8
1,830,972	-				-1.1
1,831,037	+				-0.2
1,831,039	+				+1.2
1,831,040	-				+0.4
1,831,040	-				-0.0
1,831,045	+				-0.4
1,831,084	+				+0.1
1,831,085	-				-1.0
1,831,089	+				-0.5
1,831,089	+				-0.1
1,831,089	+				-0.2
1,831,089	+				-1.7
1,831,089	+				+1.3
1,831,089	+				+0.1
1,831,090	-				-1.7
1,831,090	-				-0.2
1,831,090	-				-0.7
1,831,090	-				-1.5
1,831,090	-				-0.4
1,831,093	+				+1.0
1,831,093	+				-1.1
1,831,094	-				-0.9
1,831,222	-				+0.4
1,831,222	-				+0.4
1,831,222	-				-0.5
1,831,227	-				-1.0
1,831,253	+				+0.3
1,831,272	+	uspB	HEPCGN_15350	0.15	+0.6
1,831,310	+	uspB	HEPCGN_15350	0.26	-0.3
1,831,342	+	uspB	HEPCGN_15350	0.36	+0.0
1,831,342	+	uspB	HEPCGN_15350	0.36	+0.6
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.4
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.1
1,831,348	+	uspB	HEPCGN_15350	0.38	+1.6
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.3
1,831,348	+	uspB	HEPCGN_15350	0.38	-1.6
1,831,348	+	uspB	HEPCGN_15350	0.38	+1.7
1,831,349	-	uspB	HEPCGN_15350	0.38	+1.0
1,831,349	-	uspB	HEPCGN_15350	0.38	+0.5
1,831,371	+	uspB	HEPCGN_15350	0.44	+1.6
1,831,372	-	uspB	HEPCGN_15350	0.45	-0.1
1,831,414	+	uspB	HEPCGN_15350	0.57	+0.1
1,831,415	-	uspB	HEPCGN_15350	0.57	-1.2
1,831,415	-	uspB	HEPCGN_15350	0.57	-1.0
1,831,416	+	uspB	HEPCGN_15350	0.58	-0.1
1,831,417	-	uspB	HEPCGN_15350	0.58	+0.3
1,831,417	-	uspB	HEPCGN_15350	0.58	-1.6
1,831,421	-	uspB	HEPCGN_15350	0.59	-0.3
1,831,421	-	uspB	HEPCGN_15350	0.59	-1.3
1,831,459	-	uspB	HEPCGN_15350	0.71	-1.0
1,831,492	-	uspB	HEPCGN_15350	0.80	+0.4
1,831,624	-				+0.8
1,831,653	+				+0.3
1,831,690	+				+2.5
1,831,691	-				+1.2
1,831,694	+				+1.4
1,831,748	+				+2.3
1,831,748	+				+1.9
1,831,749	-				+2.6
1,831,790	-	pitA	HEPCGN_15355	0.11	+2.3
1,831,870	-	pitA	HEPCGN_15355	0.16	+3.3
1,831,937	-	pitA	HEPCGN_15355	0.21	+3.6
1,831,947	-	pitA	HEPCGN_15355	0.21	+2.6
1,831,999	+	pitA	HEPCGN_15355	0.25	+2.5
1,832,000	-	pitA	HEPCGN_15355	0.25	+1.6
1,832,071	+	pitA	HEPCGN_15355	0.30	+1.2
1,832,072	-	pitA	HEPCGN_15355	0.30	+2.7
1,832,098	+	pitA	HEPCGN_15355	0.31	+2.3
1,832,098	+	pitA	HEPCGN_15355	0.31	+1.6
1,832,099	-	pitA	HEPCGN_15355	0.31	+1.8
1,832,117	-	pitA	HEPCGN_15355	0.33	+2.1
1,832,143	-	pitA	HEPCGN_15355	0.34	+3.2
1,832,259	-	pitA	HEPCGN_15355	0.42	+2.5
1,832,310	+	pitA	HEPCGN_15355	0.45	+2.6
1,832,310	+	pitA	HEPCGN_15355	0.45	+2.2
1,832,311	-	pitA	HEPCGN_15355	0.46	+3.6
1,832,311	-	pitA	HEPCGN_15355	0.46	+2.8
1,832,417	-	pitA	HEPCGN_15355	0.53	+2.3
1,832,589	+	pitA	HEPCGN_15355	0.64	+1.4
1,832,670	-	pitA	HEPCGN_15355	0.69	+2.0
1,832,761	+	pitA	HEPCGN_15355	0.76	+1.6
1,832,791	-	pitA	HEPCGN_15355	0.78	+2.3
1,832,830	+	pitA	HEPCGN_15355	0.80	+2.4
1,832,830	+	pitA	HEPCGN_15355	0.80	+2.1
1,832,830	+	pitA	HEPCGN_15355	0.80	+4.0
1,832,831	-	pitA	HEPCGN_15355	0.80	+3.2
1,832,869	+	pitA	HEPCGN_15355	0.83	+1.9
1,832,870	-	pitA	HEPCGN_15355	0.83	+1.4
1,832,907	+	pitA	HEPCGN_15355	0.85	+2.0
1,832,907	+	pitA	HEPCGN_15355	0.85	+3.3
1,832,997	+				+2.2
1,832,997	+				+2.7
1,832,998	-				+2.3
1,832,998	-				+0.4
1,833,052	-				+1.7
1,833,095	-				+1.6
1,833,122	+				+2.0
1,833,122	+				+2.8
1,833,122	+				+1.9
1,833,122	+				+2.7
1,833,123	-				+2.5
1,833,123	-				+2.6
1,833,127	+				+1.0
1,833,127	+				+2.2
1,833,201	+				+2.0
1,833,202	-				+1.7
1,833,204	-				+2.4
1,833,252	+				+1.1
1,833,274	+				-1.3
1,833,275	-				-0.0
1,833,290	+				+0.7
1,833,346	-				+0.8
1,833,524	+	yhiN	HEPCGN_15360	0.14	-0.2
1,833,525	-	yhiN	HEPCGN_15360	0.14	+1.2
1,833,525	-	yhiN	HEPCGN_15360	0.14	-0.9
1,833,542	+	yhiN	HEPCGN_15360	0.15	-1.6
1,833,543	-	yhiN	HEPCGN_15360	0.15	+1.2
1,833,590	-	yhiN	HEPCGN_15360	0.19	-0.4
1,833,949	+	yhiN	HEPCGN_15360	0.49	-0.7
1,833,970	-	yhiN	HEPCGN_15360	0.51	+0.6