Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purA and yjeT are separated by 103 nucleotides yjeT and hflC are separated by 81 nucleotides hflC and hflK are separated by 2 nucleotides
HEPCGN_10460: purA - adenylosuccinate synthase, at 834,075 to 835,373
purA
HEPCGN_10465: yjeT - Uncharacterized protein YjeT, at 835,477 to 835,674
yjeT
HEPCGN_10470: hflC - protease modulator HflC, at 835,756 to 836,760
hflC
HEPCGN_10475: hflK - FtsH protease activity modulator HflK, at 836,763 to 838,022
hflK
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 834.773 kb on + strand, within purA at 834.773 kb on + strand, within purA at 834.774 kb on - strand, within purA at 834.844 kb on + strand, within purA at 834.847 kb on + strand, within purA at 834.851 kb on + strand, within purA at 834.852 kb on - strand, within purA at 834.871 kb on + strand, within purA at 834.871 kb on + strand, within purA at 834.953 kb on + strand, within purA at 834.954 kb on - strand, within purA at 834.961 kb on + strand, within purA at 834.961 kb on + strand, within purA at 834.974 kb on + strand, within purA at 835.180 kb on - strand, within purA at 835.197 kb on - strand, within purA at 835.208 kb on + strand, within purA at 835.247 kb on + strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.279 kb on - strand at 835.285 kb on + strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.286 kb on - strand at 835.320 kb on - strand at 835.325 kb on + strand at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.502 kb on + strand, within yjeT at 835.687 kb on + strand at 835.752 kb on + strand at 835.753 kb on - strand at 835.754 kb on + strand at 835.754 kb on + strand at 835.755 kb on - strand at 835.757 kb on + strand at 835.854 kb on - strand at 835.854 kb on - strand at 836.091 kb on - strand, within hflC at 836.091 kb on - strand, within hflC at 836.131 kb on - strand, within hflC at 836.263 kb on - strand, within hflC at 836.263 kb on - strand, within hflC at 836.277 kb on + strand, within hflC at 836.398 kb on - strand, within hflC at 836.650 kb on + strand, within hflC at 836.650 kb on + strand, within hflC at 836.651 kb on - strand, within hflC at 836.655 kb on + strand, within hflC at 836.671 kb on - strand at 836.673 kb on + strand at 836.711 kb on + strand at 836.711 kb on + strand at 836.711 kb on + strand at 836.712 kb on - strand at 836.754 kb on + strand at 836.755 kb on - strand at 836.755 kb on - strand at 836.755 kb on - strand at 836.764 kb on + strand at 836.823 kb on - strand at 837.043 kb on + strand, within hflK at 837.044 kb on - strand, within hflK at 837.146 kb on - strand, within hflK at 837.211 kb on + strand, within hflK at 837.212 kb on - strand, within hflK at 837.232 kb on + strand, within hflK at 837.232 kb on + strand, within hflK at 837.283 kb on - strand, within hflK at 837.428 kb on - strand, within hflK at 837.428 kb on - strand, within hflK at 837.498 kb on - strand, within hflK at 837.499 kb on + strand, within hflK at 837.500 kb on - strand, within hflK at 837.500 kb on - strand, within hflK at 837.506 kb on - strand, within hflK at 837.556 kb on - strand, within hflK at 837.728 kb on + strand, within hflK at 837.729 kb on - strand, within hflK at 837.730 kb on + strand, within hflK at 837.731 kb on - strand, within hflK
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 834,773 + purA HEPCGN_10460 0.54 -0.5 834,773 + purA HEPCGN_10460 0.54 -0.4 834,774 - purA HEPCGN_10460 0.54 -0.7 834,844 + purA HEPCGN_10460 0.59 +0.3 834,847 + purA HEPCGN_10460 0.59 +0.6 834,851 + purA HEPCGN_10460 0.60 +1.4 834,852 - purA HEPCGN_10460 0.60 +0.0 834,871 + purA HEPCGN_10460 0.61 +0.3 834,871 + purA HEPCGN_10460 0.61 +0.6 834,953 + purA HEPCGN_10460 0.68 +1.9 834,954 - purA HEPCGN_10460 0.68 +1.6 834,961 + purA HEPCGN_10460 0.68 +0.3 834,961 + purA HEPCGN_10460 0.68 +0.7 834,974 + purA HEPCGN_10460 0.69 -0.2 835,180 - purA HEPCGN_10460 0.85 -1.4 835,197 - purA HEPCGN_10460 0.86 -1.3 835,208 + purA HEPCGN_10460 0.87 +1.4 835,247 + +1.3 835,279 - -0.5 835,279 - -0.8 835,279 - -0.4 835,279 - +0.6 835,285 + -1.3 835,286 - -1.3 835,286 - +0.8 835,286 - +0.3 835,286 - +0.7 835,286 - -1.1 835,286 - -0.1 835,286 - +0.6 835,320 - +0.5 835,325 + -0.6 835,502 + yjeT HEPCGN_10465 0.13 +0.6 835,502 + yjeT HEPCGN_10465 0.13 +1.6 835,502 + yjeT HEPCGN_10465 0.13 +0.1 835,502 + yjeT HEPCGN_10465 0.13 -0.5 835,502 + yjeT HEPCGN_10465 0.13 +1.9 835,502 + yjeT HEPCGN_10465 0.13 +0.6 835,687 + +0.7 835,752 + +0.0 835,753 - -0.3 835,754 + -1.3 835,754 + +0.5 835,755 - +2.8 835,757 + -0.6 835,854 - -0.3 835,854 - -0.0 836,091 - hflC HEPCGN_10470 0.33 +0.4 836,091 - hflC HEPCGN_10470 0.33 +2.0 836,131 - hflC HEPCGN_10470 0.37 -0.6 836,263 - hflC HEPCGN_10470 0.50 +0.6 836,263 - hflC HEPCGN_10470 0.50 -0.2 836,277 + hflC HEPCGN_10470 0.52 -2.1 836,398 - hflC HEPCGN_10470 0.64 +1.6 836,650 + hflC HEPCGN_10470 0.89 +1.0 836,650 + hflC HEPCGN_10470 0.89 +2.8 836,651 - hflC HEPCGN_10470 0.89 +1.0 836,655 + hflC HEPCGN_10470 0.89 +0.9 836,671 - +1.6 836,673 + -0.5 836,711 + +0.3 836,711 + +2.2 836,711 + +1.3 836,712 - +0.4 836,754 + -0.7 836,755 - +0.8 836,755 - +0.9 836,755 - +0.3 836,764 + +0.5 836,823 - +1.2 837,043 + hflK HEPCGN_10475 0.22 +1.1 837,044 - hflK HEPCGN_10475 0.22 +1.0 837,146 - hflK HEPCGN_10475 0.30 +0.6 837,211 + hflK HEPCGN_10475 0.36 +1.6 837,212 - hflK HEPCGN_10475 0.36 +0.6 837,232 + hflK HEPCGN_10475 0.37 +0.1 837,232 + hflK HEPCGN_10475 0.37 +1.8 837,283 - hflK HEPCGN_10475 0.41 +0.0 837,428 - hflK HEPCGN_10475 0.53 +1.5 837,428 - hflK HEPCGN_10475 0.53 +0.6 837,498 - hflK HEPCGN_10475 0.58 -0.1 837,499 + hflK HEPCGN_10475 0.58 -1.2 837,500 - hflK HEPCGN_10475 0.58 +1.0 837,500 - hflK HEPCGN_10475 0.58 -0.1 837,506 - hflK HEPCGN_10475 0.59 -0.1 837,556 - hflK HEPCGN_10475 0.63 -0.4 837,728 + hflK HEPCGN_10475 0.77 +1.9 837,729 - hflK HEPCGN_10475 0.77 +1.0 837,730 + hflK HEPCGN_10475 0.77 -1.8 837,731 - hflK HEPCGN_10475 0.77 +0.7
Or see this region's nucleotide sequence