Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfJ and cysQ overlap by 11 nucleotides cysQ and cpdB are separated by 189 nucleotides cpdB and hxlR are separated by 128 nucleotides hxlR and qorB are separated by 88 nucleotides
HEPCGN_10225: ytfJ - Uncharacterized protein YtfJ, at 791,335 to 791,892
ytfJ
HEPCGN_10230: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 791,882 to 792,622
cysQ
HEPCGN_10240: cpdB - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 792,812 to 794,755
cpdB
HEPCGN_10245: hxlR - transcriptional regulator, at 794,884 to 795,264
hxlR
HEPCGN_10250: qorB - NAD(P)H:quinone oxidoreductase, at 795,353 to 796,213
qorB
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.934 kb on + strand at 791.947 kb on + strand at 792.016 kb on + strand, within cysQ at 792.039 kb on + strand, within cysQ at 792.258 kb on - strand, within cysQ at 792.258 kb on - strand, within cysQ at 792.258 kb on - strand, within cysQ at 792.266 kb on + strand, within cysQ at 792.276 kb on + strand, within cysQ at 792.276 kb on + strand, within cysQ at 792.277 kb on - strand, within cysQ at 792.287 kb on + strand, within cysQ at 792.340 kb on + strand, within cysQ at 792.341 kb on - strand, within cysQ at 792.359 kb on - strand, within cysQ at 792.359 kb on - strand, within cysQ at 792.377 kb on + strand, within cysQ at 792.565 kb on - strand at 792.574 kb on + strand at 792.608 kb on + strand at 792.609 kb on - strand at 792.618 kb on - strand at 792.618 kb on - strand at 792.725 kb on - strand at 792.750 kb on + strand at 792.751 kb on - strand at 792.751 kb on - strand at 792.752 kb on + strand at 792.752 kb on + strand at 792.752 kb on + strand at 792.753 kb on - strand at 792.753 kb on - strand at 792.784 kb on + strand at 792.817 kb on + strand at 792.817 kb on + strand at 792.817 kb on + strand at 792.818 kb on - strand at 792.823 kb on + strand at 792.887 kb on - strand at 792.910 kb on + strand at 792.910 kb on + strand at 792.911 kb on - strand at 792.970 kb on - strand at 792.973 kb on + strand at 792.974 kb on - strand at 792.974 kb on - strand at 793.020 kb on + strand, within cpdB at 793.021 kb on - strand, within cpdB at 793.067 kb on + strand, within cpdB at 793.067 kb on + strand, within cpdB at 793.067 kb on + strand, within cpdB at 793.067 kb on + strand, within cpdB at 793.068 kb on - strand, within cpdB at 793.112 kb on + strand, within cpdB at 793.112 kb on + strand, within cpdB at 793.113 kb on - strand, within cpdB at 793.113 kb on - strand, within cpdB at 793.126 kb on + strand, within cpdB at 793.172 kb on + strand, within cpdB at 793.224 kb on + strand, within cpdB at 793.224 kb on + strand, within cpdB at 793.224 kb on + strand, within cpdB at 793.224 kb on + strand, within cpdB at 793.225 kb on - strand, within cpdB at 793.225 kb on - strand, within cpdB at 793.267 kb on + strand, within cpdB at 793.274 kb on + strand, within cpdB at 793.279 kb on - strand, within cpdB at 793.282 kb on + strand, within cpdB at 793.283 kb on - strand, within cpdB at 793.339 kb on + strand, within cpdB at 793.340 kb on - strand, within cpdB at 793.340 kb on - strand, within cpdB at 793.381 kb on + strand, within cpdB at 793.434 kb on - strand, within cpdB at 793.508 kb on + strand, within cpdB at 793.509 kb on - strand, within cpdB at 793.570 kb on + strand, within cpdB at 793.570 kb on + strand, within cpdB at 793.897 kb on + strand, within cpdB at 793.897 kb on + strand, within cpdB at 793.897 kb on + strand, within cpdB at 793.897 kb on + strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.898 kb on - strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.901 kb on + strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.902 kb on - strand, within cpdB at 793.903 kb on + strand, within cpdB at 793.903 kb on + strand, within cpdB at 793.903 kb on + strand, within cpdB at 793.903 kb on + strand, within cpdB at 793.903 kb on + strand, within cpdB at 793.904 kb on - strand, within cpdB at 793.907 kb on + strand, within cpdB at 793.907 kb on + strand, within cpdB at 793.907 kb on + strand, within cpdB at 793.907 kb on + strand, within cpdB at 793.908 kb on - strand, within cpdB at 793.967 kb on + strand, within cpdB at 793.979 kb on + strand, within cpdB at 793.980 kb on - strand, within cpdB at 794.072 kb on + strand, within cpdB at 794.072 kb on + strand, within cpdB at 794.073 kb on - strand, within cpdB at 794.073 kb on - strand, within cpdB at 794.108 kb on - strand, within cpdB at 794.165 kb on - strand, within cpdB at 794.206 kb on + strand, within cpdB at 794.206 kb on + strand, within cpdB at 794.222 kb on - strand, within cpdB at 794.270 kb on + strand, within cpdB at 794.270 kb on + strand, within cpdB at 794.271 kb on - strand, within cpdB at 794.271 kb on - strand, within cpdB at 794.273 kb on - strand, within cpdB at 794.284 kb on + strand, within cpdB at 794.284 kb on + strand, within cpdB at 794.285 kb on - strand, within cpdB at 794.315 kb on - strand, within cpdB at 794.374 kb on + strand, within cpdB at 794.437 kb on + strand, within cpdB at 794.441 kb on + strand, within cpdB at 794.442 kb on - strand, within cpdB at 794.442 kb on - strand, within cpdB at 794.451 kb on - strand, within cpdB at 794.654 kb on - strand at 794.654 kb on - strand at 794.698 kb on + strand at 794.733 kb on - strand at 794.749 kb on + strand at 794.753 kb on + strand at 794.753 kb on + strand at 794.756 kb on + strand at 794.756 kb on + strand at 794.756 kb on + strand at 794.757 kb on - strand at 794.757 kb on - strand at 794.757 kb on - strand at 794.801 kb on + strand at 794.802 kb on - strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.855 kb on - strand at 794.996 kb on + strand, within hxlR at 795.055 kb on + strand, within hxlR at 795.056 kb on - strand, within hxlR at 795.132 kb on + strand, within hxlR at 795.133 kb on - strand, within hxlR at 795.291 kb on + strand at 795.318 kb on + strand at 795.318 kb on + strand at 795.319 kb on - strand at 795.322 kb on + strand at 795.323 kb on - strand at 795.352 kb on + strand at 795.353 kb on - strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.392 kb on + strand at 795.393 kb on - strand at 795.397 kb on + strand at 795.397 kb on + strand at 795.398 kb on - strand at 795.401 kb on - strand at 795.451 kb on + strand, within qorB at 795.490 kb on + strand, within qorB at 795.491 kb on - strand, within qorB at 795.496 kb on - strand, within qorB at 795.607 kb on + strand, within qorB at 795.607 kb on + strand, within qorB at 795.607 kb on + strand, within qorB at 795.608 kb on - strand, within qorB at 795.653 kb on + strand, within qorB at 795.653 kb on + strand, within qorB at 795.653 kb on + strand, within qorB at 795.655 kb on + strand, within qorB at 795.655 kb on + strand, within qorB at 795.655 kb on + strand, within qorB at 795.656 kb on - strand, within qorB at 795.656 kb on - strand, within qorB at 795.666 kb on + strand, within qorB at 795.666 kb on + strand, within qorB at 795.667 kb on - strand, within qorB at 795.676 kb on + strand, within qorB at 795.747 kb on - strand, within qorB
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 791,934 + -0.9 791,947 + -0.8 792,016 + cysQ HEPCGN_10230 0.18 -2.6 792,039 + cysQ HEPCGN_10230 0.21 +0.1 792,258 - cysQ HEPCGN_10230 0.51 -0.5 792,258 - cysQ HEPCGN_10230 0.51 -0.2 792,258 - cysQ HEPCGN_10230 0.51 -0.6 792,266 + cysQ HEPCGN_10230 0.52 +1.6 792,276 + cysQ HEPCGN_10230 0.53 -0.4 792,276 + cysQ HEPCGN_10230 0.53 -0.1 792,277 - cysQ HEPCGN_10230 0.53 +0.1 792,287 + cysQ HEPCGN_10230 0.55 -1.4 792,340 + cysQ HEPCGN_10230 0.62 -1.0 792,341 - cysQ HEPCGN_10230 0.62 -1.1 792,359 - cysQ HEPCGN_10230 0.64 +0.3 792,359 - cysQ HEPCGN_10230 0.64 -0.7 792,377 + cysQ HEPCGN_10230 0.67 -0.7 792,565 - -0.3 792,574 + -0.4 792,608 + -0.8 792,609 - -0.1 792,618 - -0.1 792,618 - -1.8 792,725 - +0.4 792,750 + +0.4 792,751 - +1.1 792,751 - +0.5 792,752 + -0.2 792,752 + +0.4 792,752 + -0.6 792,753 - +0.4 792,753 - -0.2 792,784 + +1.6 792,817 + +0.8 792,817 + -2.3 792,817 + +2.6 792,818 - -0.7 792,823 + +0.2 792,887 - +1.2 792,910 + -0.7 792,910 + -0.3 792,911 - +0.3 792,970 - -0.4 792,973 + -0.8 792,974 - -0.9 792,974 - +1.4 793,020 + cpdB HEPCGN_10240 0.11 -0.0 793,021 - cpdB HEPCGN_10240 0.11 +0.9 793,067 + cpdB HEPCGN_10240 0.13 +0.3 793,067 + cpdB HEPCGN_10240 0.13 -0.3 793,067 + cpdB HEPCGN_10240 0.13 -0.0 793,067 + cpdB HEPCGN_10240 0.13 +1.6 793,068 - cpdB HEPCGN_10240 0.13 +0.3 793,112 + cpdB HEPCGN_10240 0.15 -0.4 793,112 + cpdB HEPCGN_10240 0.15 -0.0 793,113 - cpdB HEPCGN_10240 0.15 -0.1 793,113 - cpdB HEPCGN_10240 0.15 -0.1 793,126 + cpdB HEPCGN_10240 0.16 +0.4 793,172 + cpdB HEPCGN_10240 0.19 +1.1 793,224 + cpdB HEPCGN_10240 0.21 -0.5 793,224 + cpdB HEPCGN_10240 0.21 -0.5 793,224 + cpdB HEPCGN_10240 0.21 +0.0 793,224 + cpdB HEPCGN_10240 0.21 -1.3 793,225 - cpdB HEPCGN_10240 0.21 -0.7 793,225 - cpdB HEPCGN_10240 0.21 -0.5 793,267 + cpdB HEPCGN_10240 0.23 +0.2 793,274 + cpdB HEPCGN_10240 0.24 -0.4 793,279 - cpdB HEPCGN_10240 0.24 +1.5 793,282 + cpdB HEPCGN_10240 0.24 +0.4 793,283 - cpdB HEPCGN_10240 0.24 +0.0 793,339 + cpdB HEPCGN_10240 0.27 +1.0 793,340 - cpdB HEPCGN_10240 0.27 +1.5 793,340 - cpdB HEPCGN_10240 0.27 +0.6 793,381 + cpdB HEPCGN_10240 0.29 +0.8 793,434 - cpdB HEPCGN_10240 0.32 -0.1 793,508 + cpdB HEPCGN_10240 0.36 -3.1 793,509 - cpdB HEPCGN_10240 0.36 +0.3 793,570 + cpdB HEPCGN_10240 0.39 -0.0 793,570 + cpdB HEPCGN_10240 0.39 +0.5 793,897 + cpdB HEPCGN_10240 0.56 +0.6 793,897 + cpdB HEPCGN_10240 0.56 -1.0 793,897 + cpdB HEPCGN_10240 0.56 -0.2 793,897 + cpdB HEPCGN_10240 0.56 +0.1 793,898 - cpdB HEPCGN_10240 0.56 +1.5 793,898 - cpdB HEPCGN_10240 0.56 +0.7 793,898 - cpdB HEPCGN_10240 0.56 -0.4 793,898 - cpdB HEPCGN_10240 0.56 -1.5 793,898 - cpdB HEPCGN_10240 0.56 -0.3 793,898 - cpdB HEPCGN_10240 0.56 -0.2 793,898 - cpdB HEPCGN_10240 0.56 -0.6 793,901 + cpdB HEPCGN_10240 0.56 +0.0 793,901 + cpdB HEPCGN_10240 0.56 -0.2 793,901 + cpdB HEPCGN_10240 0.56 +0.2 793,901 + cpdB HEPCGN_10240 0.56 +1.6 793,901 + cpdB HEPCGN_10240 0.56 +0.9 793,901 + cpdB HEPCGN_10240 0.56 +0.1 793,901 + cpdB HEPCGN_10240 0.56 +0.8 793,901 + cpdB HEPCGN_10240 0.56 -0.6 793,901 + cpdB HEPCGN_10240 0.56 -1.0 793,901 + cpdB HEPCGN_10240 0.56 -0.4 793,901 + cpdB HEPCGN_10240 0.56 +0.1 793,901 + cpdB HEPCGN_10240 0.56 -0.7 793,901 + cpdB HEPCGN_10240 0.56 -0.8 793,902 - cpdB HEPCGN_10240 0.56 +1.2 793,902 - cpdB HEPCGN_10240 0.56 +0.1 793,902 - cpdB HEPCGN_10240 0.56 +0.9 793,902 - cpdB HEPCGN_10240 0.56 +0.2 793,902 - cpdB HEPCGN_10240 0.56 -1.2 793,902 - cpdB HEPCGN_10240 0.56 +0.8 793,902 - cpdB HEPCGN_10240 0.56 +0.4 793,902 - cpdB HEPCGN_10240 0.56 +0.7 793,903 + cpdB HEPCGN_10240 0.56 +2.2 793,903 + cpdB HEPCGN_10240 0.56 -0.5 793,903 + cpdB HEPCGN_10240 0.56 +0.8 793,903 + cpdB HEPCGN_10240 0.56 -0.2 793,903 + cpdB HEPCGN_10240 0.56 -1.0 793,904 - cpdB HEPCGN_10240 0.56 +0.5 793,907 + cpdB HEPCGN_10240 0.56 +2.4 793,907 + cpdB HEPCGN_10240 0.56 +0.6 793,907 + cpdB HEPCGN_10240 0.56 +0.6 793,907 + cpdB HEPCGN_10240 0.56 -0.2 793,908 - cpdB HEPCGN_10240 0.56 +0.8 793,967 + cpdB HEPCGN_10240 0.59 +0.7 793,979 + cpdB HEPCGN_10240 0.60 -1.1 793,980 - cpdB HEPCGN_10240 0.60 -0.3 794,072 + cpdB HEPCGN_10240 0.65 -1.0 794,072 + cpdB HEPCGN_10240 0.65 -0.0 794,073 - cpdB HEPCGN_10240 0.65 +0.1 794,073 - cpdB HEPCGN_10240 0.65 -0.3 794,108 - cpdB HEPCGN_10240 0.67 +1.0 794,165 - cpdB HEPCGN_10240 0.70 +0.2 794,206 + cpdB HEPCGN_10240 0.72 -0.8 794,206 + cpdB HEPCGN_10240 0.72 -0.3 794,222 - cpdB HEPCGN_10240 0.73 -0.9 794,270 + cpdB HEPCGN_10240 0.75 -0.3 794,270 + cpdB HEPCGN_10240 0.75 +0.1 794,271 - cpdB HEPCGN_10240 0.75 -0.5 794,271 - cpdB HEPCGN_10240 0.75 +0.2 794,273 - cpdB HEPCGN_10240 0.75 -2.0 794,284 + cpdB HEPCGN_10240 0.76 +0.1 794,284 + cpdB HEPCGN_10240 0.76 +0.3 794,285 - cpdB HEPCGN_10240 0.76 -2.8 794,315 - cpdB HEPCGN_10240 0.77 -0.1 794,374 + cpdB HEPCGN_10240 0.80 +0.3 794,437 + cpdB HEPCGN_10240 0.84 -0.1 794,441 + cpdB HEPCGN_10240 0.84 +0.3 794,442 - cpdB HEPCGN_10240 0.84 +0.6 794,442 - cpdB HEPCGN_10240 0.84 +0.0 794,451 - cpdB HEPCGN_10240 0.84 +0.5 794,654 - +0.0 794,654 - +1.0 794,698 + -1.1 794,733 - -1.1 794,749 + +0.3 794,753 + -0.2 794,753 + -0.6 794,756 + -0.5 794,756 + -0.2 794,756 + -0.3 794,757 - -0.2 794,757 - -1.9 794,757 - -1.5 794,801 + -0.9 794,802 - +0.0 794,854 + -1.1 794,854 + +0.5 794,855 - -1.3 794,996 + hxlR HEPCGN_10245 0.29 -2.7 795,055 + hxlR HEPCGN_10245 0.45 +2.6 795,056 - hxlR HEPCGN_10245 0.45 -0.9 795,132 + hxlR HEPCGN_10245 0.65 -0.5 795,133 - hxlR HEPCGN_10245 0.65 +0.3 795,291 + -1.0 795,318 + +1.3 795,318 + -0.5 795,319 - +0.2 795,322 + -1.2 795,323 - -0.2 795,352 + +0.1 795,353 - +0.3 795,392 + -0.8 795,392 + +0.0 795,392 + -0.1 795,392 + +0.6 795,392 + -1.2 795,392 + -0.3 795,392 + +0.3 795,392 + -1.1 795,393 - +1.0 795,397 + -2.0 795,397 + +0.1 795,398 - +0.5 795,401 - +0.2 795,451 + qorB HEPCGN_10250 0.11 -0.8 795,490 + qorB HEPCGN_10250 0.16 -0.6 795,491 - qorB HEPCGN_10250 0.16 -0.1 795,496 - qorB HEPCGN_10250 0.17 -0.1 795,607 + qorB HEPCGN_10250 0.30 +0.3 795,607 + qorB HEPCGN_10250 0.30 -0.9 795,607 + qorB HEPCGN_10250 0.30 -0.1 795,608 - qorB HEPCGN_10250 0.30 -1.6 795,653 + qorB HEPCGN_10250 0.35 -1.3 795,653 + qorB HEPCGN_10250 0.35 +1.4 795,653 + qorB HEPCGN_10250 0.35 -1.0 795,655 + qorB HEPCGN_10250 0.35 +0.3 795,655 + qorB HEPCGN_10250 0.35 -0.2 795,655 + qorB HEPCGN_10250 0.35 -0.2 795,656 - qorB HEPCGN_10250 0.35 -0.2 795,656 - qorB HEPCGN_10250 0.35 +0.5 795,666 + qorB HEPCGN_10250 0.36 -0.6 795,666 + qorB HEPCGN_10250 0.36 -0.2 795,667 - qorB HEPCGN_10250 0.36 -0.4 795,676 + qorB HEPCGN_10250 0.38 +1.5 795,747 - qorB HEPCGN_10250 0.46 +0.4
Or see this region's nucleotide sequence