Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cDA1 and HEPCGN_09780 are separated by 206 nucleotides HEPCGN_09780 and HEPCGN_09785 are separated by 241 nucleotides HEPCGN_09785 and ltrA are separated by 591 nucleotides
HEPCGN_09775: cDA1 - carbohydrate transporter, at 700,579 to 701,400
cDA1
HEPCGN_09780: HEPCGN_09780 - Transposase (Identified by ISEscan HMM), at 701,607 to 701,909
_09780
HEPCGN_09785: HEPCGN_09785 - IS911 orfA, at 702,151 to 702,390
_09785
HEPCGN_09790: ltrA - group II intron reverse transcriptase/maturase, at 702,982 to 704,505
ltrA
Position (kb) 702
703 Strain fitness (log2 ratio) -1
0
1
2 at 701.168 kb on - strand, within cDA1 at 701.485 kb on - strand at 701.586 kb on - strand at 701.606 kb on + strand at 701.607 kb on - strand at 701.774 kb on - strand, within HEPCGN_09780 at 701.774 kb on - strand, within HEPCGN_09780 at 701.774 kb on - strand, within HEPCGN_09780 at 701.774 kb on - strand, within HEPCGN_09780 at 701.865 kb on - strand, within HEPCGN_09780 at 701.887 kb on + strand at 702.057 kb on - strand at 702.071 kb on + strand at 702.225 kb on + strand, within HEPCGN_09785 at 702.225 kb on + strand, within HEPCGN_09785 at 702.226 kb on - strand, within HEPCGN_09785 at 702.226 kb on - strand, within HEPCGN_09785 at 702.226 kb on - strand, within HEPCGN_09785 at 702.325 kb on - strand, within HEPCGN_09785
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 701,168 - cDA1 HEPCGN_09775 0.72 -0.3 701,485 - -0.6 701,586 - +0.7 701,606 + -0.7 701,607 - +1.9 701,774 - HEPCGN_09780 0.55 +0.1 701,774 - HEPCGN_09780 0.55 +1.4 701,774 - HEPCGN_09780 0.55 +0.9 701,774 - HEPCGN_09780 0.55 +0.8 701,865 - HEPCGN_09780 0.85 -0.4 701,887 + +1.0 702,057 - +0.3 702,071 + -0.2 702,225 + HEPCGN_09785 0.31 -0.3 702,225 + HEPCGN_09785 0.31 -0.0 702,226 - HEPCGN_09785 0.31 +2.6 702,226 - HEPCGN_09785 0.31 +0.3 702,226 - HEPCGN_09785 0.31 -0.9 702,325 - HEPCGN_09785 0.72 +0.9
Or see this region's nucleotide sequence