Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcY and HEPCGN_00535 are separated by 68 nucleotides HEPCGN_00535 and menH are separated by 281 nucleotides menH and ompT are separated by 186 nucleotides
HEPCGN_00530: ybcY - Putative uncharacterized protein YbcY, at 28,591 to 29,247
ybcY
HEPCGN_00535: HEPCGN_00535 - Phage tail fiber assembly protein, at 29,316 to 29,516
_00535
HEPCGN_00540: menH - alpha/beta hydrolase, at 29,798 to 31,282
menH
HEPCGN_00545: ompT - omptin family outer membrane protease OmpT, at 31,469 to 32,422
ompT
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.814 kb on - strand, within ybcY at 28.835 kb on - strand, within ybcY at 28.838 kb on - strand, within ybcY at 28.838 kb on - strand, within ybcY at 28.838 kb on - strand, within ybcY at 28.916 kb on - strand, within ybcY at 28.956 kb on + strand, within ybcY at 28.986 kb on + strand, within ybcY at 28.986 kb on + strand, within ybcY at 29.048 kb on - strand, within ybcY at 29.097 kb on + strand, within ybcY at 29.304 kb on - strand at 29.427 kb on + strand, within HEPCGN_00535 at 29.427 kb on + strand, within HEPCGN_00535 at 29.427 kb on + strand, within HEPCGN_00535 at 29.428 kb on - strand, within HEPCGN_00535 at 29.429 kb on + strand, within HEPCGN_00535 at 29.430 kb on - strand, within HEPCGN_00535 at 29.528 kb on - strand at 29.528 kb on - strand at 29.535 kb on + strand at 29.536 kb on - strand at 29.607 kb on + strand at 29.701 kb on - strand at 29.917 kb on + strand at 30.015 kb on - strand, within menH at 30.073 kb on + strand, within menH at 30.074 kb on - strand, within menH at 30.074 kb on - strand, within menH at 30.077 kb on + strand, within menH at 30.078 kb on - strand, within menH at 30.078 kb on - strand, within menH at 30.210 kb on - strand, within menH at 30.286 kb on + strand, within menH at 30.286 kb on + strand, within menH at 30.395 kb on - strand, within menH at 30.413 kb on + strand, within menH at 30.443 kb on + strand, within menH at 30.444 kb on - strand, within menH at 30.462 kb on - strand, within menH at 30.544 kb on - strand, within menH at 30.627 kb on - strand, within menH at 30.653 kb on + strand, within menH at 30.653 kb on + strand, within menH at 30.654 kb on - strand, within menH at 30.752 kb on - strand, within menH at 30.853 kb on + strand, within menH at 30.854 kb on - strand, within menH at 30.916 kb on + strand, within menH at 30.962 kb on - strand, within menH at 30.964 kb on + strand, within menH at 30.964 kb on + strand, within menH at 30.966 kb on + strand, within menH at 31.013 kb on - strand, within menH at 31.056 kb on - strand, within menH at 31.081 kb on - strand, within menH at 31.242 kb on - strand at 31.303 kb on + strand at 31.323 kb on - strand at 31.365 kb on + strand at 31.406 kb on + strand at 31.406 kb on + strand at 31.407 kb on - strand at 31.439 kb on - strand at 31.483 kb on + strand at 31.484 kb on - strand at 31.540 kb on - strand at 31.645 kb on - strand, within ompT at 31.702 kb on - strand, within ompT at 31.768 kb on + strand, within ompT at 31.769 kb on - strand, within ompT at 31.769 kb on - strand, within ompT at 31.920 kb on + strand, within ompT at 31.921 kb on - strand, within ompT at 32.053 kb on + strand, within ompT at 32.066 kb on - strand, within ompT at 32.122 kb on + strand, within ompT at 32.123 kb on - strand, within ompT at 32.167 kb on + strand, within ompT at 32.167 kb on + strand, within ompT at 32.172 kb on - strand, within ompT at 32.209 kb on + strand, within ompT
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 28,814 - ybcY HEPCGN_00530 0.34 -2.0 28,835 - ybcY HEPCGN_00530 0.37 -0.6 28,838 - ybcY HEPCGN_00530 0.38 -1.4 28,838 - ybcY HEPCGN_00530 0.38 +0.4 28,838 - ybcY HEPCGN_00530 0.38 +2.3 28,916 - ybcY HEPCGN_00530 0.49 -2.4 28,956 + ybcY HEPCGN_00530 0.56 -0.4 28,986 + ybcY HEPCGN_00530 0.60 -0.9 28,986 + ybcY HEPCGN_00530 0.60 +0.5 29,048 - ybcY HEPCGN_00530 0.70 -0.5 29,097 + ybcY HEPCGN_00530 0.77 -0.6 29,304 - -0.8 29,427 + HEPCGN_00535 0.55 -0.1 29,427 + HEPCGN_00535 0.55 -0.9 29,427 + HEPCGN_00535 0.55 -1.2 29,428 - HEPCGN_00535 0.56 +0.1 29,429 + HEPCGN_00535 0.56 -0.1 29,430 - HEPCGN_00535 0.57 -0.5 29,528 - -0.3 29,528 - -0.7 29,535 + -1.4 29,536 - +0.9 29,607 + -0.0 29,701 - -1.0 29,917 + +0.2 30,015 - menH HEPCGN_00540 0.15 +0.5 30,073 + menH HEPCGN_00540 0.19 -0.3 30,074 - menH HEPCGN_00540 0.19 +0.8 30,074 - menH HEPCGN_00540 0.19 -0.3 30,077 + menH HEPCGN_00540 0.19 +0.3 30,078 - menH HEPCGN_00540 0.19 -0.9 30,078 - menH HEPCGN_00540 0.19 +0.2 30,210 - menH HEPCGN_00540 0.28 -1.0 30,286 + menH HEPCGN_00540 0.33 -0.2 30,286 + menH HEPCGN_00540 0.33 -0.5 30,395 - menH HEPCGN_00540 0.40 +1.7 30,413 + menH HEPCGN_00540 0.41 -0.2 30,443 + menH HEPCGN_00540 0.43 -0.0 30,444 - menH HEPCGN_00540 0.44 -0.3 30,462 - menH HEPCGN_00540 0.45 +0.3 30,544 - menH HEPCGN_00540 0.50 +0.1 30,627 - menH HEPCGN_00540 0.56 -2.4 30,653 + menH HEPCGN_00540 0.58 +0.4 30,653 + menH HEPCGN_00540 0.58 -0.9 30,654 - menH HEPCGN_00540 0.58 -0.3 30,752 - menH HEPCGN_00540 0.64 +0.2 30,853 + menH HEPCGN_00540 0.71 -0.3 30,854 - menH HEPCGN_00540 0.71 -1.0 30,916 + menH HEPCGN_00540 0.75 -0.6 30,962 - menH HEPCGN_00540 0.78 +0.4 30,964 + menH HEPCGN_00540 0.79 -0.2 30,964 + menH HEPCGN_00540 0.79 -0.9 30,966 + menH HEPCGN_00540 0.79 +0.2 31,013 - menH HEPCGN_00540 0.82 -0.5 31,056 - menH HEPCGN_00540 0.85 -1.0 31,081 - menH HEPCGN_00540 0.86 +0.9 31,242 - -1.4 31,303 + -1.3 31,323 - -0.1 31,365 + +1.3 31,406 + +0.3 31,406 + -2.4 31,407 - -0.5 31,439 - -2.0 31,483 + -0.3 31,484 - +0.6 31,540 - -1.5 31,645 - ompT HEPCGN_00545 0.18 +0.5 31,702 - ompT HEPCGN_00545 0.24 -0.4 31,768 + ompT HEPCGN_00545 0.31 -1.0 31,769 - ompT HEPCGN_00545 0.31 +2.0 31,769 - ompT HEPCGN_00545 0.31 +0.2 31,920 + ompT HEPCGN_00545 0.47 -2.0 31,921 - ompT HEPCGN_00545 0.47 -0.6 32,053 + ompT HEPCGN_00545 0.61 -0.2 32,066 - ompT HEPCGN_00545 0.63 -2.4 32,122 + ompT HEPCGN_00545 0.68 -2.0 32,123 - ompT HEPCGN_00545 0.69 -0.2 32,167 + ompT HEPCGN_00545 0.73 -1.3 32,167 + ompT HEPCGN_00545 0.73 -0.7 32,172 - ompT HEPCGN_00545 0.74 +0.1 32,209 + ompT HEPCGN_00545 0.78 +0.4
Or see this region's nucleotide sequence