Strain Fitness in Variovorax sp. SCN45 around GFF7045

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7044 and GFF7045 are separated by 22 nucleotidesGFF7045 and GFF7046 are separated by 29 nucleotides GFF7044 - Inner membrane protein YedI, at 6,037 to 6,945 GFF7044 GFF7045 - hypothetical protein, at 6,968 to 7,180 GFF7045 GFF7046 - FIG00854755: hypothetical protein, at 7,210 to 8,406 GFF7046 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 6.595 kb on + strand, within GFF7044at 6.596 kb on - strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.641 kb on - strand, within GFF7044at 6.970 kb on - strandat 6.970 kb on - strandat 7.048 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.461 kb on - strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.737 kb on - strand, within GFF7046

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
remove
6,595 + GFF7044 0.61 +0.2
6,596 - GFF7044 0.61 +0.2
6,640 + GFF7044 0.66 -0.8
6,640 + GFF7044 0.66 +0.6
6,641 - GFF7044 0.66 +0.5
6,970 - -0.6
6,970 - -1.2
7,048 + GFF7045 0.38 -0.2
7,050 + GFF7045 0.38 -0.0
7,050 + GFF7045 0.38 +0.8
7,050 + GFF7045 0.38 -0.4
7,050 + GFF7045 0.38 -1.2
7,050 + GFF7045 0.38 -0.8
7,050 + GFF7045 0.38 +0.4
7,051 - GFF7045 0.39 +0.8
7,051 - GFF7045 0.39 -1.8
7,051 - GFF7045 0.39 -0.1
7,051 - GFF7045 0.39 -0.6
7,051 - GFF7045 0.39 -0.4
7,051 - GFF7045 0.39 -0.6
7,337 + GFF7046 0.11 -0.2
7,337 + GFF7046 0.11 -0.4
7,337 + GFF7046 0.11 -0.8
7,337 + GFF7046 0.11 -0.0
7,337 + GFF7046 0.11 +0.1
7,337 + GFF7046 0.11 +0.0
7,337 + GFF7046 0.11 -0.6
7,337 + GFF7046 0.11 +0.8
7,337 + GFF7046 0.11 +1.0
7,338 - GFF7046 0.11 -0.6
7,338 - GFF7046 0.11 -0.5
7,338 - GFF7046 0.11 +0.1
7,338 - GFF7046 0.11 -0.2
7,338 - GFF7046 0.11 -1.4
7,338 - GFF7046 0.11 +0.1
7,338 - GFF7046 0.11 +0.8
7,338 - GFF7046 0.11 -1.2
7,338 - GFF7046 0.11 -0.6
7,338 - GFF7046 0.11 -1.6
7,338 - GFF7046 0.11 -0.0
7,343 + GFF7046 0.11 +0.7
7,343 + GFF7046 0.11 +0.4
7,343 + GFF7046 0.11 -0.5
7,343 + GFF7046 0.11 -2.2
7,343 + GFF7046 0.11 -0.8
7,343 + GFF7046 0.11 -1.1
7,343 + GFF7046 0.11 +1.4
7,343 + GFF7046 0.11 -1.3
7,343 + GFF7046 0.11 -0.2
7,343 + GFF7046 0.11 -0.3
7,343 + GFF7046 0.11 -0.2
7,344 - GFF7046 0.11 -0.2
7,344 - GFF7046 0.11 -0.8
7,344 - GFF7046 0.11 +0.3
7,460 + GFF7046 0.21 +1.4
7,460 + GFF7046 0.21 -0.3
7,461 - GFF7046 0.21 -0.6
7,466 + GFF7046 0.21 +0.1
7,466 + GFF7046 0.21 -0.9
7,467 - GFF7046 0.21 -0.5
7,467 - GFF7046 0.21 -0.4
7,467 - GFF7046 0.21 +0.2
7,700 + GFF7046 0.41 -0.1
7,700 + GFF7046 0.41 +0.5
7,700 + GFF7046 0.41 -0.3
7,700 + GFF7046 0.41 +0.8
7,700 + GFF7046 0.41 +0.2
7,700 + GFF7046 0.41 -1.2
7,701 - GFF7046 0.41 +0.4
7,701 - GFF7046 0.41 +0.2
7,701 - GFF7046 0.41 +0.6
7,701 - GFF7046 0.41 -2.9
7,701 - GFF7046 0.41 -0.9
7,736 + GFF7046 0.44 -0.3
7,736 + GFF7046 0.44 +0.1
7,736 + GFF7046 0.44 -0.6
7,736 + GFF7046 0.44 -0.6
7,737 - GFF7046 0.44 -0.0

Or see this region's nucleotide sequence