Strain Fitness in Variovorax sp. SCN45 around GFF7037

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
1,866	+				+0.6
1,867	-				+0.4
1,867	-				-0.1
1,970	+		GFF7036	0.20	+0.8
1,970	+		GFF7036	0.20	-0.1
1,970	+		GFF7036	0.20	+0.3
2,244	-		GFF7036	0.61	-0.6
2,244	-		GFF7036	0.61	-0.0
2,244	-		GFF7036	0.61	+0.3
2,791	+				-0.7
2,791	+				-0.5
2,791	+				+0.3
2,791	+				+0.8
2,791	+				-0.9
2,791	+				-0.3
2,791	+				+0.7
2,791	+				-1.6
2,791	+				+0.2
2,791	+				+1.3
2,791	+				+0.4
2,791	+				+1.0
2,791	+				-1.6
2,792	-				-1.2
2,792	-				+0.2
2,792	-				-0.4
2,792	-				+0.1
2,792	-				+0.8
2,792	-				+1.0
2,792	-				-0.1
2,792	-				+3.4
2,792	-				+1.6
2,792	-				-0.3
2,792	-				-0.9
2,792	-				+1.0
2,792	-				-1.2
2,792	-				+2.2
2,792	-				-1.2
2,792	-				-0.9
2,792	-				+0.5
2,792	-				-0.2
2,792	-				-0.4
2,792	-				-1.4
2,792	-				+0.2
2,792	-				+0.7
2,792	-				-0.9
2,836	+				-1.4
2,836	+				-0.4
2,881	-		GFF7037	0.14	+0.2
2,881	-		GFF7037	0.14	-0.2
3,190	+		GFF7037	0.39	+0.2
3,190	+		GFF7037	0.39	+0.2
3,191	-		GFF7037	0.39	-0.1
3,191	-		GFF7037	0.39	+1.1
3,247	+		GFF7037	0.44	-0.5
3,247	+		GFF7037	0.44	+0.3
3,247	+		GFF7037	0.44	-0.1
3,248	-		GFF7037	0.44	+0.3
3,248	-		GFF7037	0.44	-0.8
3,253	+		GFF7037	0.45	-1.2
3,253	+		GFF7037	0.45	+0.7
3,253	+		GFF7037	0.45	+0.4
3,253	+		GFF7037	0.45	-0.6
3,254	-		GFF7037	0.45	+2.1
3,254	-		GFF7037	0.45	+0.4
3,254	-		GFF7037	0.45	-0.4
3,254	-		GFF7037	0.45	+0.5
3,254	-		GFF7037	0.45	-0.6
3,400	+		GFF7037	0.57	+0.2
3,400	+		GFF7037	0.57	-0.4
3,400	+		GFF7037	0.57	+0.7
3,400	+		GFF7037	0.57	-1.0
3,400	+		GFF7037	0.57	-0.0
3,400	+		GFF7037	0.57	+0.3
3,401	-		GFF7037	0.57	-0.0
3,401	-		GFF7037	0.57	+1.1
3,401	-		GFF7037	0.57	+0.7
3,917	-				+0.1
4,289	+		GFF7040	0.21	+0.7
4,289	+		GFF7040	0.21	+2.0
4,289	+		GFF7040	0.21	-0.4
4,289	+		GFF7040	0.21	-1.4
4,289	+		GFF7040	0.21	-0.4
4,289	+		GFF7040	0.21	-0.5
4,290	-		GFF7040	0.21	-1.4
4,290	-		GFF7040	0.21	-0.2
4,412	+		GFF7040	0.64	-0.8
4,412	+		GFF7040	0.64	-0.4
4,412	+		GFF7040	0.64	-0.4
4,412	+		GFF7040	0.64	+0.3
4,412	+		GFF7040	0.64	+1.4
4,412	+		GFF7040	0.64	-0.8
4,413	-		GFF7040	0.65	+0.2
4,413	-		GFF7040	0.65	-0.6
4,667	-				-0.8
4,677	+				-0.5
4,678	-				+1.3
4,717	+				+0.2
4,718	-				-0.4
4,830	+		GFF7042	0.16	-2.2
4,830	+		GFF7042	0.16	+0.7
4,831	-		GFF7042	0.16	+0.6
4,831	-		GFF7042	0.16	-1.1
4,911	+		GFF7042	0.32	-0.2
4,911	+		GFF7042	0.32	+0.1
4,911	+		GFF7042	0.32	-0.7
4,912	-		GFF7042	0.32	-1.0