Strain Fitness in Variovorax sp. SCN45 around GFF6915

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6914 and GFF6915 are separated by 97 nucleotidesGFF6915 and GFF6916 are separated by 17 nucleotidesGFF6916 and GFF6917 are separated by 84 nucleotides GFF6914 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 49,974 to 52,148 GFF6914 GFF6915 - Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein, at 52,246 to 52,938 GFF6915 GFF6916 - Methyltransferase type 11, at 52,956 to 53,561 GFF6916 GFF6917 - Uncharacterized MFS-type transporter, at 53,646 to 54,986 GFF6917 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.198 kb on + strandat 52.199 kb on - strandat 52.199 kb on - strandat 52.199 kb on - strandat 52.199 kb on - strandat 52.531 kb on + strand, within GFF6915at 52.532 kb on - strand, within GFF6915at 52.532 kb on - strand, within GFF6915at 52.532 kb on - strand, within GFF6915at 52.627 kb on + strand, within GFF6915at 52.627 kb on + strand, within GFF6915at 52.627 kb on + strand, within GFF6915at 52.627 kb on + strand, within GFF6915at 52.627 kb on + strand, within GFF6915at 52.628 kb on - strand, within GFF6915at 52.628 kb on - strand, within GFF6915at 52.628 kb on - strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.723 kb on + strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.724 kb on - strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.750 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.780 kb on + strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.781 kb on - strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.843 kb on + strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.844 kb on - strand, within GFF6915at 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.927 kb on + strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 52.928 kb on - strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.016 kb on + strandat 53.017 kb on - strand, within GFF6916at 53.017 kb on - strand, within GFF6916at 53.431 kb on + strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.432 kb on - strand, within GFF6916at 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.566 kb on + strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.567 kb on - strandat 53.609 kb on - strandat 53.609 kb on - strandat 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.787 kb on + strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.788 kb on - strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.913 kb on + strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917at 53.914 kb on - strand, within GFF6917

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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52,198 + -0.3
52,199 - +2.5
52,199 - -0.8
52,199 - +2.9
52,199 - -0.3
52,531 + GFF6915 0.41 -0.7
52,532 - GFF6915 0.41 +0.5
52,532 - GFF6915 0.41 -0.9
52,532 - GFF6915 0.41 +1.6
52,627 + GFF6915 0.55 +2.5
52,627 + GFF6915 0.55 +0.1
52,627 + GFF6915 0.55 -0.4
52,627 + GFF6915 0.55 -0.7
52,627 + GFF6915 0.55 +0.5
52,628 - GFF6915 0.55 +1.1
52,628 - GFF6915 0.55 +1.9
52,628 - GFF6915 0.55 +0.7
52,723 + GFF6915 0.69 -0.3
52,723 + GFF6915 0.69 -0.3
52,723 + GFF6915 0.69 -0.5
52,723 + GFF6915 0.69 +0.0
52,724 - GFF6915 0.69 -1.3
52,724 - GFF6915 0.69 -0.4
52,750 + GFF6915 0.73 +0.6
52,750 + GFF6915 0.73 +1.2
52,780 + GFF6915 0.77 +0.7
52,780 + GFF6915 0.77 +0.8
52,781 - GFF6915 0.77 -0.6
52,781 - GFF6915 0.77 +0.4
52,843 + GFF6915 0.86 -2.1
52,843 + GFF6915 0.86 +1.9
52,843 + GFF6915 0.86 -0.2
52,843 + GFF6915 0.86 -1.2
52,843 + GFF6915 0.86 -0.5
52,843 + GFF6915 0.86 -0.7
52,843 + GFF6915 0.86 -0.4
52,844 - GFF6915 0.86 +0.3
52,844 - GFF6915 0.86 -2.0
52,844 - GFF6915 0.86 +1.2
52,844 - GFF6915 0.86 +0.0
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 -1.7
52,844 - GFF6915 0.86 -0.6
52,844 - GFF6915 0.86 -0.2
52,844 - GFF6915 0.86 +0.6
52,844 - GFF6915 0.86 -0.7
52,844 - GFF6915 0.86 +1.1
52,927 + -1.0
52,927 + +0.6
52,927 + -0.3
52,927 + +0.4
52,927 + +0.1
52,927 + -0.5
52,927 + +0.5
52,928 - -0.9
52,928 - +0.1
52,928 - -1.6
52,928 - -0.1
52,928 - -1.5
52,928 - -0.3
52,928 - +0.8
52,928 - +0.9
52,928 - -0.6
53,016 + +0.6
53,016 + +0.3
53,016 + -0.9
53,016 + +1.1
53,017 - GFF6916 0.10 +0.1
53,017 - GFF6916 0.10 -0.8
53,431 + GFF6916 0.78 -0.1
53,432 - GFF6916 0.79 -0.7
53,432 - GFF6916 0.79 -0.5
53,566 + +0.3
53,566 + -0.4
53,566 + -0.7
53,566 + +3.7
53,566 + -0.2
53,566 + +0.8
53,566 + -0.6
53,567 - -0.7
53,567 - -0.3
53,567 - +1.9
53,567 - +0.6
53,567 - -0.3
53,567 - +0.1
53,567 - -0.1
53,567 - -0.4
53,609 - +1.2
53,609 - -0.1
53,787 + GFF6917 0.11 -0.4
53,787 + GFF6917 0.11 -0.0
53,787 + GFF6917 0.11 -0.2
53,788 - GFF6917 0.11 +0.7
53,788 - GFF6917 0.11 -1.1
53,788 - GFF6917 0.11 -0.7
53,788 - GFF6917 0.11 -0.9
53,913 + GFF6917 0.20 +0.0
53,913 + GFF6917 0.20 +0.6
53,913 + GFF6917 0.20 -0.3
53,913 + GFF6917 0.20 -0.8
53,913 + GFF6917 0.20 +0.9
53,913 + GFF6917 0.20 -0.6
53,913 + GFF6917 0.20 +0.6
53,913 + GFF6917 0.20 +0.8
53,913 + GFF6917 0.20 -0.6
53,914 - GFF6917 0.20 +1.7
53,914 - GFF6917 0.20 +1.9
53,914 - GFF6917 0.20 -1.6

Or see this region's nucleotide sequence