Strain Fitness in Variovorax sp. SCN45 around GFF6857

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
50,925	+				-0.0
50,926	-				+0.7
50,926	-				-0.9
51,044	+				-0.0
51,045	-				-0.7
51,045	-				-0.2
51,045	-				-1.2
51,045	-				-0.0
51,081	+				+0.5
51,081	+				-1.5
51,081	+				+1.6
51,081	+				+0.1
51,106	+				-0.3
51,116	+				+0.7
51,116	+				+0.2
51,116	+				+1.2
51,116	+				+0.0
51,116	+				-0.1
51,117	-				-0.5
51,117	-				+0.5
51,117	-				-0.4
51,241	-		GFF6856	0.18	-0.2
51,241	-		GFF6856	0.18	-0.5
51,241	-		GFF6856	0.18	-1.7
51,425	+		GFF6856	0.47	-0.1
51,425	+		GFF6856	0.47	-1.3
51,425	+		GFF6856	0.47	-0.1
51,426	-		GFF6856	0.47	-1.0
51,426	-		GFF6856	0.47	-0.5
51,426	-		GFF6856	0.47	+0.5
51,426	-		GFF6856	0.47	+0.3
51,426	-		GFF6856	0.47	-0.2
51,426	-		GFF6856	0.47	+1.0
51,459	-		GFF6856	0.52	-0.3
51,459	-		GFF6856	0.52	-0.2
51,482	+		GFF6856	0.55	-1.1
51,483	-		GFF6856	0.55	+0.2
51,483	-		GFF6856	0.55	-0.4
51,483	-		GFF6856	0.55	-0.1
51,611	+		GFF6856	0.75	+0.1
51,612	-		GFF6856	0.75	-1.1
51,612	-		GFF6856	0.75	+1.5
51,612	-		GFF6856	0.75	-0.3
51,612	-		GFF6856	0.75	-1.0
51,642	-		GFF6856	0.80	+0.5
51,656	+		GFF6856	0.82	-0.9
51,657	-		GFF6856	0.82	-1.2
51,686	+		GFF6856	0.87	-0.5
51,687	-		GFF6856	0.87	-0.6
51,710	+				-0.5
51,710	+				+1.2
51,710	+				-0.4
51,710	+				-0.1
51,710	+				-1.1
51,933	+		GFF6857	0.43	-1.0
51,934	-		GFF6857	0.43	-1.4
51,934	-		GFF6857	0.43	-0.3
51,934	-		GFF6857	0.43	-0.7
52,004	+				+0.5
52,004	+				-0.9
52,019	-				+0.5
52,042	+		GFF6858	0.16	-0.4
52,094	-		GFF6858	0.50	+0.5
52,147	+		GFF6858	0.85	+0.3
52,147	+		GFF6858	0.85	-0.0
52,147	+		GFF6858	0.85	+0.5
52,148	-		GFF6858	0.86	-0.5
52,236	+				-1.3
52,236	+				-0.5
52,237	-				+0.0
52,237	-				-0.5
52,237	-				-0.3
52,237	-				+0.1
52,261	+				+0.0
52,261	+				+0.1
52,261	+				-0.5
52,261	+				+0.3
52,315	-				-0.1
52,315	-				-0.3
52,315	-				+0.7
52,315	-				-1.1
52,341	+				-0.2
52,341	+				+0.1
52,342	-				-0.1
52,342	-				-2.5
52,484	+		GFF6859	0.28	-1.2
52,485	-		GFF6859	0.28	-0.3
52,485	-		GFF6859	0.28	-0.3
52,485	-		GFF6859	0.28	+0.9
52,704	+		GFF6859	0.57	+0.1
52,704	+		GFF6859	0.57	+0.7
52,705	-		GFF6859	0.57	+0.4
52,705	-		GFF6859	0.57	-1.4
52,705	-		GFF6859	0.57	-0.4
52,705	-		GFF6859	0.57	+0.2
52,788	+		GFF6859	0.69	-0.3
52,788	+		GFF6859	0.69	-0.9
52,788	+		GFF6859	0.69	-0.7
52,788	+		GFF6859	0.69	+0.5
52,788	+		GFF6859	0.69	-0.6
52,788	+		GFF6859	0.69	-0.5
52,789	-		GFF6859	0.69	+0.1
52,789	-		GFF6859	0.69	-1.4
52,789	-		GFF6859	0.69	-0.3
52,789	-		GFF6859	0.69	-0.2
52,789	-		GFF6859	0.69	-0.8
52,789	-		GFF6859	0.69	-0.5
52,789	-		GFF6859	0.69	-1.1
52,947	+				-0.3
52,947	+				+0.5
52,947	+				+0.1
52,948	-				+0.4
52,948	-				-1.7
52,948	-				+0.2
52,948	-				-0.7