Strain Fitness in Variovorax sp. SCN45 around GFF6621

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
64,615	-		GFF6620	0.42	-0.8
64,741	+		GFF6620	0.55	-1.4
64,741	+		GFF6620	0.55	+0.1
64,957	+		GFF6620	0.78	-0.3
64,995	+		GFF6620	0.81	+0.5
64,996	-		GFF6620	0.82	-0.2
64,996	-		GFF6620	0.82	-0.6
64,996	-		GFF6620	0.82	-0.9
65,004	+		GFF6620	0.82	+0.1
65,004	+		GFF6620	0.82	-0.3
65,101	+				-0.5
65,102	-				-1.8
65,164	+				-0.1
65,164	+				-0.2
65,165	-				+0.7
65,189	+				+0.4
65,189	+				+1.7
65,190	-				+0.5
65,197	+				-0.4
65,198	-				+0.3
65,220	+				+0.1
65,221	-				-1.7
65,221	-				+0.3
65,221	-				-0.1
65,336	+				-0.2
65,337	-				-1.6
65,376	+				+0.2
65,377	-				+0.6
65,377	-				+0.3
65,377	-				-1.1
65,377	-				+0.4
65,377	-				+0.3
65,415	-				+0.9
65,493	+				-2.2
65,493	+				-0.9
65,494	-				-0.6
65,494	-				-0.7
65,494	-				+2.5
65,507	-				-0.7
65,593	+				-1.7
65,593	+				-0.7
65,593	+				+0.3
65,593	+				-0.0
65,593	+				+0.2
65,594	-				-1.0
65,594	-				+0.3
65,648	+				+0.5
65,648	+				-0.3
65,648	+				-0.1
65,648	+				-0.1
65,648	+				-2.0
65,649	-				-1.1
65,649	-				-0.6
65,649	-				+0.3
65,649	-				-1.8
65,936	+		GFF6621	0.22	+0.9
65,936	+		GFF6621	0.22	+0.6
65,937	-		GFF6621	0.22	+0.2
65,937	-		GFF6621	0.22	-0.2
65,937	-		GFF6621	0.22	+0.2
65,937	-		GFF6621	0.22	+0.8
65,985	+		GFF6621	0.25	-0.6
65,985	+		GFF6621	0.25	+0.2
65,985	+		GFF6621	0.25	-1.1
65,985	+		GFF6621	0.25	-0.9
65,986	-		GFF6621	0.25	-0.4
65,986	-		GFF6621	0.25	+1.8
65,986	-		GFF6621	0.25	-0.2
66,122	+		GFF6621	0.34	-0.2
66,122	+		GFF6621	0.34	+0.0
66,122	+		GFF6621	0.34	-0.8
66,122	+		GFF6621	0.34	-0.4
66,123	-		GFF6621	0.34	-2.6
66,123	-		GFF6621	0.34	-0.8
66,123	-		GFF6621	0.34	+1.3
66,123	-		GFF6621	0.34	-1.1
66,287	+		GFF6621	0.45	+0.1
66,287	+		GFF6621	0.45	+0.6
66,397	-		GFF6621	0.52	-1.5
66,397	-		GFF6621	0.52	-0.0
66,591	-		GFF6621	0.65	+0.4
66,621	+		GFF6621	0.67	-1.0
66,621	+		GFF6621	0.67	+0.2
66,621	+		GFF6621	0.67	+0.0
66,622	-		GFF6621	0.67	-0.1
66,622	-		GFF6621	0.67	-1.2
66,622	-		GFF6621	0.67	+1.5
66,793	-		GFF6621	0.78	-0.4
66,881	+		GFF6621	0.84	-0.6
66,882	-		GFF6621	0.84	+0.2
67,118	+				+0.2
67,119	-				-0.5
67,119	-				-0.7
67,119	-				+0.3
67,130	+				-0.5
67,130	+				-2.2
67,131	-				-0.8
67,147	-				+1.3
67,201	+				-1.1
67,201	+				-0.2
67,357	+		GFF6622	0.29	+1.1
67,357	+		GFF6622	0.29	-0.1
67,357	+		GFF6622	0.29	-0.1
67,358	-		GFF6622	0.30	-0.1
67,534	+		GFF6622	0.53	-0.9
67,534	+		GFF6622	0.53	-2.6
67,534	+		GFF6622	0.53	-0.3
67,534	+		GFF6622	0.53	+0.7
67,535	-		GFF6622	0.53	+0.1
67,535	-		GFF6622	0.53	-1.4
67,535	-		GFF6622	0.53	+0.2
67,535	-		GFF6622	0.53	-0.5
67,612	+		GFF6622	0.63	-0.9
67,612	+		GFF6622	0.63	-0.3
67,613	-		GFF6622	0.63	-0.7
67,629	-		GFF6622	0.66	-0.9
67,912	-				+0.1
67,912	-				+0.3
67,912	-				+0.5
67,937	+				-0.6
67,938	-				+0.1
67,992	+				-0.6
67,998	+				-0.3
67,998	+				+0.1
67,998	+				+1.5
67,998	+				-0.1
67,999	-				+0.3
67,999	-				+0.3
68,092	+				-0.3
68,093	-				+0.8
68,093	-				-0.2