Strain Fitness in Variovorax sp. SCN45 around GFF6218

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6217 and GFF6218 overlap by 11 nucleotides GFF6217 - hypothetical protein, at 125,245 to 126,237 GFF6217 GFF6218 - no description, at 126,227 to 126,571 GFF6218 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.265 kb on + strandat 125.265 kb on + strandat 125.265 kb on + strandat 125.265 kb on + strandat 125.424 kb on + strand, within GFF6217at 125.424 kb on + strand, within GFF6217at 125.425 kb on - strand, within GFF6217at 125.673 kb on + strand, within GFF6217at 125.673 kb on + strand, within GFF6217at 125.673 kb on + strand, within GFF6217at 125.673 kb on + strand, within GFF6217at 125.674 kb on - strand, within GFF6217at 125.694 kb on + strand, within GFF6217at 125.695 kb on - strand, within GFF6217at 125.695 kb on - strand, within GFF6217at 125.850 kb on - strand, within GFF6217at 125.904 kb on + strand, within GFF6217at 125.904 kb on + strand, within GFF6217at 125.905 kb on - strand, within GFF6217at 125.936 kb on - strand, within GFF6217at 125.936 kb on - strand, within GFF6217at 125.969 kb on - strand, within GFF6217at 126.004 kb on + strand, within GFF6217at 126.035 kb on + strand, within GFF6217at 126.118 kb on + strand, within GFF6217at 126.118 kb on + strand, within GFF6217at 126.119 kb on - strand, within GFF6217at 126.119 kb on - strand, within GFF6217at 126.229 kb on - strandat 126.283 kb on - strand, within GFF6218at 126.283 kb on - strand, within GFF6218at 126.283 kb on - strand, within GFF6218at 126.283 kb on - strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.312 kb on + strand, within GFF6218at 126.313 kb on - strand, within GFF6218at 126.313 kb on - strand, within GFF6218at 126.313 kb on - strand, within GFF6218at 126.357 kb on + strand, within GFF6218at 126.357 kb on + strand, within GFF6218at 126.357 kb on + strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.358 kb on - strand, within GFF6218at 126.591 kb on - strandat 126.591 kb on - strandat 126.835 kb on + strandat 126.835 kb on + strandat 126.850 kb on + strandat 126.851 kb on - strandat 126.851 kb on - strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.920 kb on + strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.921 kb on - strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.955 kb on + strandat 126.956 kb on - strandat 126.956 kb on - strandat 126.956 kb on - strandat 126.956 kb on - strandat 126.956 kb on - strandat 127.102 kb on + strandat 127.102 kb on + strandat 127.102 kb on + strandat 127.102 kb on + strandat 127.103 kb on - strandat 127.103 kb on - strandat 127.166 kb on + strandat 127.166 kb on + strandat 127.166 kb on + strandat 127.166 kb on + strandat 127.166 kb on + strandat 127.167 kb on - strandat 127.167 kb on - strandat 127.167 kb on - strandat 127.167 kb on - strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.412 kb on + strandat 127.413 kb on - strandat 127.413 kb on - strandat 127.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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125,265 + +0.4
125,265 + +0.6
125,265 + +0.2
125,265 + -0.7
125,424 + GFF6217 0.18 -0.2
125,424 + GFF6217 0.18 -0.2
125,425 - GFF6217 0.18 -0.6
125,673 + GFF6217 0.43 +0.1
125,673 + GFF6217 0.43 -1.4
125,673 + GFF6217 0.43 -0.6
125,673 + GFF6217 0.43 +0.2
125,674 - GFF6217 0.43 -1.0
125,694 + GFF6217 0.45 +0.6
125,695 - GFF6217 0.45 -1.2
125,695 - GFF6217 0.45 -2.1
125,850 - GFF6217 0.61 +0.5
125,904 + GFF6217 0.66 +0.5
125,904 + GFF6217 0.66 -0.0
125,905 - GFF6217 0.66 +0.1
125,936 - GFF6217 0.70 +0.4
125,936 - GFF6217 0.70 -0.2
125,969 - GFF6217 0.73 +1.1
126,004 + GFF6217 0.76 -0.1
126,035 + GFF6217 0.80 +0.5
126,118 + GFF6217 0.88 -0.5
126,118 + GFF6217 0.88 +0.1
126,119 - GFF6217 0.88 +0.6
126,119 - GFF6217 0.88 -0.5
126,229 - +0.0
126,283 - GFF6218 0.16 +0.1
126,283 - GFF6218 0.16 +0.3
126,283 - GFF6218 0.16 +0.5
126,283 - GFF6218 0.16 -0.7
126,312 + GFF6218 0.25 -0.5
126,312 + GFF6218 0.25 -0.2
126,312 + GFF6218 0.25 +0.0
126,312 + GFF6218 0.25 -0.1
126,312 + GFF6218 0.25 +1.0
126,312 + GFF6218 0.25 +0.9
126,313 - GFF6218 0.25 -0.1
126,313 - GFF6218 0.25 +0.4
126,313 - GFF6218 0.25 +1.0
126,357 + GFF6218 0.38 -0.4
126,357 + GFF6218 0.38 -0.9
126,357 + GFF6218 0.38 -0.8
126,358 - GFF6218 0.38 -0.2
126,358 - GFF6218 0.38 -0.9
126,358 - GFF6218 0.38 -0.4
126,358 - GFF6218 0.38 -0.4
126,358 - GFF6218 0.38 +1.0
126,358 - GFF6218 0.38 +0.1
126,358 - GFF6218 0.38 +1.1
126,591 - -0.9
126,591 - -0.4
126,835 + +0.8
126,835 + -0.2
126,850 + -1.2
126,851 - +0.4
126,851 - -0.9
126,920 + -0.2
126,920 + +0.3
126,920 + -0.2
126,920 + +0.2
126,920 + -0.2
126,920 + -0.2
126,920 + +0.1
126,920 + -1.0
126,920 + +0.9
126,921 - -0.2
126,921 - +0.2
126,921 - -0.9
126,921 - +0.2
126,921 - +0.3
126,921 - -0.3
126,921 - -0.2
126,921 - -1.1
126,921 - -1.6
126,921 - -0.0
126,921 - -0.5
126,921 - -0.1
126,955 + -0.5
126,955 + +0.1
126,955 + +0.2
126,955 + -0.9
126,955 + -0.7
126,955 + -0.2
126,955 + +0.6
126,956 - -0.5
126,956 - +0.1
126,956 - +0.4
126,956 - -0.1
126,956 - +2.4
127,102 + -0.5
127,102 + +1.5
127,102 + -0.6
127,102 + -0.1
127,103 - -0.6
127,103 - -0.1
127,166 + +0.6
127,166 + -0.3
127,166 + -1.2
127,166 + +0.1
127,166 + -0.5
127,167 - -0.4
127,167 - +0.3
127,167 - -1.2
127,167 - -0.7
127,412 + -0.8
127,412 + +1.3
127,412 + -0.3
127,412 + -0.2
127,412 + +1.0
127,412 + -0.7
127,412 + -0.4
127,412 + -0.6
127,413 - -0.2
127,413 - -0.0
127,413 - -0.1

Or see this region's nucleotide sequence