Strain Fitness in Variovorax sp. SCN45 around GFF6134

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6132 and GFF6133 overlap by 4 nucleotidesGFF6133 and GFF6134 are separated by 1 nucleotidesGFF6134 and GFF6135 are separated by 138 nucleotides GFF6132 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 33,442 to 34,245 GFF6132 GFF6133 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 34,242 to 35,105 GFF6133 GFF6134 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 35,107 to 35,988 GFF6134 GFF6135 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 36,127 to 37,281 GFF6135 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.831 kb on + strand, within GFF6133at 34.831 kb on + strand, within GFF6133at 34.831 kb on + strand, within GFF6133at 34.832 kb on - strand, within GFF6133at 34.832 kb on - strand, within GFF6133at 34.832 kb on - strand, within GFF6133at 34.931 kb on - strand, within GFF6133at 34.931 kb on - strand, within GFF6133at 34.957 kb on + strand, within GFF6133at 35.108 kb on + strandat 35.108 kb on + strandat 35.109 kb on - strandat 35.109 kb on - strandat 35.109 kb on - strandat 35.213 kb on + strand, within GFF6134at 35.213 kb on + strand, within GFF6134at 35.213 kb on + strand, within GFF6134at 35.214 kb on - strand, within GFF6134at 35.357 kb on + strand, within GFF6134at 35.417 kb on + strand, within GFF6134at 35.418 kb on - strand, within GFF6134at 35.450 kb on + strand, within GFF6134at 35.450 kb on + strand, within GFF6134at 35.451 kb on - strand, within GFF6134at 35.911 kb on + strandat 35.912 kb on - strandat 35.942 kb on + strandat 35.942 kb on + strandat 35.943 kb on - strandat 35.943 kb on - strandat 35.943 kb on - strandat 36.054 kb on + strandat 36.054 kb on + strandat 36.054 kb on + strandat 36.054 kb on + strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.055 kb on - strandat 36.120 kb on + strandat 36.128 kb on + strandat 36.128 kb on + strandat 36.128 kb on + strandat 36.128 kb on + strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.191 kb on + strandat 36.350 kb on + strand, within GFF6135at 36.350 kb on + strand, within GFF6135at 36.350 kb on + strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.351 kb on - strand, within GFF6135at 36.362 kb on + strand, within GFF6135at 36.362 kb on + strand, within GFF6135at 36.410 kb on + strand, within GFF6135at 36.410 kb on + strand, within GFF6135at 36.410 kb on + strand, within GFF6135at 36.411 kb on - strand, within GFF6135at 36.411 kb on - strand, within GFF6135at 36.411 kb on - strand, within GFF6135at 36.473 kb on + strand, within GFF6135at 36.473 kb on + strand, within GFF6135at 36.473 kb on + strand, within GFF6135at 36.473 kb on + strand, within GFF6135at 36.473 kb on + strand, within GFF6135at 36.474 kb on - strand, within GFF6135at 36.474 kb on - strand, within GFF6135at 36.474 kb on - strand, within GFF6135at 36.474 kb on - strand, within GFF6135at 36.744 kb on - strand, within GFF6135at 36.872 kb on + strand, within GFF6135at 36.872 kb on + strand, within GFF6135at 36.872 kb on + strand, within GFF6135at 36.873 kb on - strand, within GFF6135at 36.873 kb on - strand, within GFF6135at 36.873 kb on - strand, within GFF6135

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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34,831 + GFF6133 0.68 -1.2
34,831 + GFF6133 0.68 -1.2
34,831 + GFF6133 0.68 -0.4
34,832 - GFF6133 0.68 +2.1
34,832 - GFF6133 0.68 -0.6
34,832 - GFF6133 0.68 +0.3
34,931 - GFF6133 0.80 -0.7
34,931 - GFF6133 0.80 +1.1
34,957 + GFF6133 0.83 -0.3
35,108 + -0.0
35,108 + -0.4
35,109 - -1.0
35,109 - +0.0
35,109 - -0.5
35,213 + GFF6134 0.12 -1.3
35,213 + GFF6134 0.12 +0.1
35,213 + GFF6134 0.12 -0.5
35,214 - GFF6134 0.12 -0.7
35,357 + GFF6134 0.28 +0.1
35,417 + GFF6134 0.35 -1.2
35,418 - GFF6134 0.35 +1.0
35,450 + GFF6134 0.39 -0.9
35,450 + GFF6134 0.39 -0.1
35,451 - GFF6134 0.39 -0.7
35,911 + -0.4
35,912 - -0.4
35,942 + -0.3
35,942 + +0.6
35,943 - -0.3
35,943 - +0.3
35,943 - -0.1
36,054 + -1.0
36,054 + +0.2
36,054 + +0.3
36,054 + -1.1
36,055 - -0.1
36,055 - -1.3
36,055 - -1.3
36,055 - -0.4
36,055 - +1.6
36,055 - +0.4
36,055 - -0.3
36,120 + +0.4
36,128 + -0.1
36,128 + +0.6
36,128 + -0.5
36,128 + -0.2
36,129 - +0.5
36,129 - +0.4
36,129 - +0.7
36,129 - +0.5
36,129 - -0.3
36,191 + +1.2
36,350 + GFF6135 0.19 -2.6
36,350 + GFF6135 0.19 -0.2
36,350 + GFF6135 0.19 +0.3
36,351 - GFF6135 0.19 -0.1
36,351 - GFF6135 0.19 -0.1
36,351 - GFF6135 0.19 -2.6
36,351 - GFF6135 0.19 -0.4
36,351 - GFF6135 0.19 -0.2
36,351 - GFF6135 0.19 -0.1
36,351 - GFF6135 0.19 +0.6
36,351 - GFF6135 0.19 +0.2
36,362 + GFF6135 0.20 -0.2
36,362 + GFF6135 0.20 -1.2
36,410 + GFF6135 0.25 -0.4
36,410 + GFF6135 0.25 +0.6
36,410 + GFF6135 0.25 -0.4
36,411 - GFF6135 0.25 -0.3
36,411 - GFF6135 0.25 +1.2
36,411 - GFF6135 0.25 +0.7
36,473 + GFF6135 0.30 -0.7
36,473 + GFF6135 0.30 -1.4
36,473 + GFF6135 0.30 +0.8
36,473 + GFF6135 0.30 +0.5
36,473 + GFF6135 0.30 +0.2
36,474 - GFF6135 0.30 -0.2
36,474 - GFF6135 0.30 +0.6
36,474 - GFF6135 0.30 -1.0
36,474 - GFF6135 0.30 -0.7
36,744 - GFF6135 0.53 -0.2
36,872 + GFF6135 0.65 -0.0
36,872 + GFF6135 0.65 +0.6
36,872 + GFF6135 0.65 -0.3
36,873 - GFF6135 0.65 -1.6
36,873 - GFF6135 0.65 -0.2
36,873 - GFF6135 0.65 -1.0

Or see this region's nucleotide sequence