Strain Fitness in Variovorax sp. SCN45 around GFF6121

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
21,985	-		GFF6120	0.61	-0.6
22,014	+		GFF6120	0.62	+0.1
22,014	+		GFF6120	0.62	-0.3
22,015	-		GFF6120	0.62	+1.1
22,015	-		GFF6120	0.62	-0.7
22,020	+		GFF6120	0.63	-0.8
22,020	+		GFF6120	0.63	+2.1
22,020	+		GFF6120	0.63	-0.7
22,020	+		GFF6120	0.63	-1.1
22,021	-		GFF6120	0.63	-0.8
22,021	-		GFF6120	0.63	-0.6
22,021	-		GFF6120	0.63	-1.3
22,030	-		GFF6120	0.63	+0.3
22,030	-		GFF6120	0.63	-0.7
22,050	+		GFF6120	0.64	-1.4
22,050	+		GFF6120	0.64	+1.4
22,050	+		GFF6120	0.64	-0.2
22,051	-		GFF6120	0.64	-1.1
22,051	-		GFF6120	0.64	-0.2
22,068	+		GFF6120	0.65	+0.4
22,068	+		GFF6120	0.65	-2.2
22,080	+		GFF6120	0.65	-0.0
22,080	+		GFF6120	0.65	-0.5
22,080	+		GFF6120	0.65	+0.3
22,081	-		GFF6120	0.66	+0.3
22,081	-		GFF6120	0.66	+0.1
22,081	-		GFF6120	0.66	+0.1
22,081	-		GFF6120	0.66	-0.8
22,117	-		GFF6120	0.67	-0.6
22,117	-		GFF6120	0.67	-0.6
22,152	+		GFF6120	0.69	+1.1
22,153	-		GFF6120	0.69	+0.0
22,155	+		GFF6120	0.69	+0.0
22,155	+		GFF6120	0.69	-0.4
22,155	+		GFF6120	0.69	+0.1
22,156	-		GFF6120	0.69	-0.3
22,186	-		GFF6120	0.71	-0.4
22,186	-		GFF6120	0.71	-0.6
22,186	-		GFF6120	0.71	-0.9
22,311	+		GFF6120	0.77	+0.2
22,311	+		GFF6120	0.77	-2.1
22,311	+		GFF6120	0.77	+0.1
22,312	-		GFF6120	0.77	-0.2
22,312	-		GFF6120	0.77	-0.8
22,312	-		GFF6120	0.77	-1.8
22,312	-		GFF6120	0.77	-0.2
22,314	+		GFF6120	0.77	-0.7
22,314	+		GFF6120	0.77	-0.5
22,315	-		GFF6120	0.77	+0.3
22,500	+		GFF6120	0.86	-0.3
22,543	-		GFF6120	0.88	-0.9
22,570	-		GFF6120	0.89	-0.7
22,596	+				-0.9
22,597	-				+0.5
22,800	+				+1.1
22,800	+				+0.7
22,951	+				-0.9
22,951	+				+1.8
22,951	+				-0.0
22,951	+				+0.8
22,952	-				+1.5
22,955	+				+1.4
22,955	+				-0.4
22,955	+				-0.4
22,955	+				-0.1
22,955	+				-0.3
22,955	+				-0.6
22,955	+				+0.8
22,955	+				-0.2
22,955	+				+0.4
22,955	+				-0.3
22,956	-				+0.3
22,956	-				-0.7
22,956	-				-0.2
22,956	-				-0.7
22,956	-				-0.2
22,973	+				-1.2
22,973	+				+0.8
22,973	+				+0.3
22,974	-				+0.2
22,974	-				-0.1
22,974	-				+1.4
23,139	+		GFF6121	0.29	-1.8
23,159	+		GFF6121	0.32	-0.1
23,159	+		GFF6121	0.32	-1.5
23,601	+				+0.4
23,601	-				+0.6
23,602	-				-0.2
23,602	-				+1.1
23,602	-				+0.1
23,602	-				-0.1
23,602	-				-0.4
23,717	+				-0.2
23,717	+				+0.2
23,718	-				+0.4
24,074	-		GFF6122	0.38	-0.5
24,074	-		GFF6122	0.38	-0.4
24,502	+		GFF6122	0.72	-0.2