Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5603 and GFF5604 are separated by 116 nucleotides GFF5604 and GFF5605 are separated by 1 nucleotides GFF5605 and GFF5606 are separated by 1 nucleotides
GFF5603 - D-xylose ABC transporter, substrate-binding protein XylF, at 221,746 to 222,768
GFF5603
GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075
GFF5604
GFF5605 - D-xylose ABC transporter, ATP-binding protein XylG, at 224,077 to 224,874
GFF5605
GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039
GFF5606
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 223.023 kb on + strand, within GFF5604 at 223.023 kb on + strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.228 kb on - strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 224.049 kb on + strand at 224.179 kb on + strand, within GFF5605 at 224.180 kb on - strand, within GFF5605 at 224.350 kb on + strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.767 kb on + strand, within GFF5605 at 224.768 kb on - strand, within GFF5605
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL remove 221,908 + GFF5603 0.16 -1.4 221,908 + GFF5603 0.16 -2.2 221,908 + GFF5603 0.16 -2.3 221,908 + GFF5603 0.16 -1.7 221,908 + GFF5603 0.16 -1.4 221,908 + GFF5603 0.16 -2.9 221,908 + GFF5603 0.16 +2.0 221,909 - GFF5603 0.16 -1.4 221,909 - GFF5603 0.16 -1.5 221,909 - GFF5603 0.16 -1.7 221,909 - GFF5603 0.16 -2.3 222,071 - GFF5603 0.32 -0.9 222,071 - GFF5603 0.32 -2.3 222,071 - GFF5603 0.32 -2.2 222,071 - GFF5603 0.32 -1.1 222,103 + GFF5603 0.35 -2.1 222,103 + GFF5603 0.35 -1.3 222,103 + GFF5603 0.35 -1.6 222,103 + GFF5603 0.35 -1.6 222,103 + GFF5603 0.35 -2.0 222,103 + GFF5603 0.35 -2.4 222,103 + GFF5603 0.35 -0.9 222,103 + GFF5603 0.35 -2.1 222,103 + GFF5603 0.35 -0.3 222,103 + GFF5603 0.35 -0.8 222,103 + GFF5603 0.35 -1.6 222,103 + GFF5603 0.35 -3.4 222,104 - GFF5603 0.35 -0.1 222,104 - GFF5603 0.35 -0.7 222,104 - GFF5603 0.35 -1.7 222,104 - GFF5603 0.35 -1.0 222,104 - GFF5603 0.35 -0.8 222,104 - GFF5603 0.35 -0.2 222,178 + GFF5603 0.42 -1.7 222,178 + GFF5603 0.42 -2.7 222,178 + GFF5603 0.42 -1.6 222,178 + GFF5603 0.42 -2.5 222,178 + GFF5603 0.42 -0.6 222,178 + GFF5603 0.42 +0.2 222,178 + GFF5603 0.42 -2.3 222,178 + GFF5603 0.42 -1.2 222,178 + GFF5603 0.42 -2.4 222,178 + GFF5603 0.42 -1.7 222,178 + GFF5603 0.42 -0.9 222,178 + GFF5603 0.42 +2.0 222,178 + GFF5603 0.42 -1.6 222,179 - GFF5603 0.42 -1.4 222,179 - GFF5603 0.42 -0.2 222,179 - GFF5603 0.42 -3.2 222,179 - GFF5603 0.42 -1.0 222,179 - GFF5603 0.42 -2.2 222,179 - GFF5603 0.42 -1.0 222,179 - GFF5603 0.42 -3.0 222,179 - GFF5603 0.42 -1.6 222,179 - GFF5603 0.42 -1.3 222,295 + GFF5603 0.54 -1.7 222,295 + GFF5603 0.54 -1.3 222,295 + GFF5603 0.54 -2.0 222,296 - GFF5603 0.54 -3.6 222,296 - GFF5603 0.54 -1.7 222,766 + +0.3 222,766 + -0.8 222,766 + -1.3 222,766 + -1.6 222,766 + -1.2 222,766 + +0.4 222,767 - -0.6 222,767 - -0.0 222,767 - -1.5 222,767 - +2.0 222,767 - -2.4 222,767 - -1.3 222,767 - -1.3 223,023 + GFF5604 0.12 -2.5 223,023 + GFF5604 0.12 -2.1 223,024 - GFF5604 0.12 -1.0 223,024 - GFF5604 0.12 -0.3 223,024 - GFF5604 0.12 -1.6 223,158 + GFF5604 0.23 -1.2 223,158 + GFF5604 0.23 -0.6 223,158 + GFF5604 0.23 -0.3 223,158 + GFF5604 0.23 -1.6 223,158 + GFF5604 0.23 -0.8 223,158 + GFF5604 0.23 -2.3 223,158 + GFF5604 0.23 +0.4 223,159 - GFF5604 0.23 -2.2 223,159 - GFF5604 0.23 -1.6 223,159 - GFF5604 0.23 -1.9 223,159 - GFF5604 0.23 -1.7 223,159 - GFF5604 0.23 -2.1 223,159 - GFF5604 0.23 -1.2 223,227 + GFF5604 0.29 -1.2 223,227 + GFF5604 0.29 -1.2 223,227 + GFF5604 0.29 -1.0 223,228 - GFF5604 0.29 -1.2 223,572 + GFF5604 0.58 -1.5 223,572 + GFF5604 0.58 +1.1 223,573 - GFF5604 0.58 -3.3 223,573 - GFF5604 0.58 -1.2 223,683 + GFF5604 0.67 -1.8 223,683 + GFF5604 0.67 -1.6 223,683 + GFF5604 0.67 -1.3 223,683 + GFF5604 0.67 -0.8 223,684 - GFF5604 0.67 -1.4 223,684 - GFF5604 0.67 -1.1 223,684 - GFF5604 0.67 -0.7 223,684 - GFF5604 0.67 -0.0 223,684 - GFF5604 0.67 -0.8 223,857 + GFF5604 0.82 -1.5 223,857 + GFF5604 0.82 -1.7 223,857 + GFF5604 0.82 -1.2 223,857 + GFF5604 0.82 -1.3 223,858 - GFF5604 0.82 -0.9 223,858 - GFF5604 0.82 -1.6 223,858 - GFF5604 0.82 -1.0 223,858 - GFF5604 0.82 -3.3 223,858 - GFF5604 0.82 -1.3 223,858 - GFF5604 0.82 -2.1 224,049 + -1.9 224,179 + GFF5605 0.13 -1.0 224,180 - GFF5605 0.13 -2.6 224,350 + GFF5605 0.34 -1.0 224,351 - GFF5605 0.34 +0.1 224,351 - GFF5605 0.34 -0.2 224,351 - GFF5605 0.34 -2.3 224,569 + GFF5605 0.62 -1.5 224,569 + GFF5605 0.62 -1.3 224,570 - GFF5605 0.62 -0.2 224,570 - GFF5605 0.62 -1.6 224,767 + GFF5605 0.86 -0.0 224,768 - GFF5605 0.87 -1.2
Or see this region's nucleotide sequence