Strain Fitness in Variovorax sp. SCN45 around GFF5587

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5585 and GFF5586 are separated by 23 nucleotidesGFF5586 and GFF5587 overlap by 10 nucleotidesGFF5587 and GFF5588 are separated by 150 nucleotidesGFF5588 and GFF5589 overlap by 4 nucleotides GFF5585 - Transcriptional regulator, MarR family, at 206,272 to 206,694 GFF5585 GFF5586 - Acetoin dehydrogenase E1 component beta-subunit (EC 2.3.1.190), at 206,718 to 207,686 GFF5586 GFF5587 - Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190), at 207,677 to 208,693 GFF5587 GFF5588 - hypothetical protein, at 208,844 to 209,125 GFF5588 GFF5589 - Methionine aminopeptidase (EC 3.4.11.18), at 209,122 to 209,919 GFF5589 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.794 kb on + strandat 206.794 kb on + strandat 206.794 kb on + strandat 206.795 kb on - strandat 206.795 kb on - strandat 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.658 kb on + strandat 207.658 kb on + strandat 207.658 kb on + strandat 207.659 kb on - strandat 207.659 kb on - strandat 207.659 kb on - strandat 207.904 kb on - strand, within GFF5587at 207.942 kb on + strand, within GFF5587at 207.943 kb on - strand, within GFF5587at 207.943 kb on - strand, within GFF5587at 207.943 kb on - strand, within GFF5587at 208.168 kb on - strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.479 kb on + strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.480 kb on - strand, within GFF5587at 208.587 kb on + strand, within GFF5587at 208.587 kb on + strand, within GFF5587at 208.588 kb on - strand, within GFF5587at 208.660 kb on - strandat 208.737 kb on + strandat 208.737 kb on + strandat 208.769 kb on + strandat 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.294 kb on + strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.295 kb on - strand, within GFF5589at 209.323 kb on + strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.324 kb on - strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.467 kb on + strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.468 kb on - strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.518 kb on + strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.519 kb on - strand, within GFF5589at 209.632 kb on + strand, within GFF5589at 209.633 kb on - strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.659 kb on + strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.660 kb on - strand, within GFF5589at 209.687 kb on - strand, within GFF5589

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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206,794 + +0.3
206,794 + -0.5
206,794 + -1.2
206,795 - +1.0
206,795 - +0.4
207,169 + GFF5586 0.47 -1.3
207,169 + GFF5586 0.47 -1.4
207,169 + GFF5586 0.47 -0.3
207,169 + GFF5586 0.47 -0.4
207,169 + GFF5586 0.47 -0.0
207,169 + GFF5586 0.47 +0.8
207,169 + GFF5586 0.47 +0.2
207,169 + GFF5586 0.47 +0.2
207,169 + GFF5586 0.47 +1.0
207,170 - GFF5586 0.47 -0.5
207,170 - GFF5586 0.47 +0.4
207,170 - GFF5586 0.47 -0.2
207,170 - GFF5586 0.47 -1.3
207,240 + GFF5586 0.54 +0.3
207,240 + GFF5586 0.54 -1.0
207,240 + GFF5586 0.54 -1.7
207,556 + GFF5586 0.86 +0.3
207,556 + GFF5586 0.86 -1.4
207,556 + GFF5586 0.86 +0.4
207,556 + GFF5586 0.86 -0.8
207,556 + GFF5586 0.86 -1.1
207,556 + GFF5586 0.86 -0.4
207,556 + GFF5586 0.86 -0.4
207,556 + GFF5586 0.86 -0.5
207,556 + GFF5586 0.86 -2.3
207,556 + GFF5586 0.86 +0.1
207,556 + GFF5586 0.86 +1.0
207,556 + GFF5586 0.86 +0.8
207,556 + GFF5586 0.86 +0.2
207,556 + GFF5586 0.86 -1.3
207,557 - GFF5586 0.87 -0.3
207,557 - GFF5586 0.87 -0.3
207,557 - GFF5586 0.87 -0.8
207,557 - GFF5586 0.87 +0.4
207,557 - GFF5586 0.87 -0.2
207,557 - GFF5586 0.87 +0.5
207,557 - GFF5586 0.87 -0.3
207,557 - GFF5586 0.87 -0.6
207,557 - GFF5586 0.87 -0.3
207,557 - GFF5586 0.87 -0.3
207,557 - GFF5586 0.87 +0.0
207,658 + +0.8
207,658 + -1.1
207,658 + +0.1
207,659 - +0.2
207,659 - -0.1
207,659 - +0.4
207,904 - GFF5587 0.22 +0.5
207,942 + GFF5587 0.26 -0.3
207,943 - GFF5587 0.26 +0.3
207,943 - GFF5587 0.26 -0.2
207,943 - GFF5587 0.26 +0.2
208,168 - GFF5587 0.48 +0.2
208,479 + GFF5587 0.79 +0.4
208,479 + GFF5587 0.79 -0.5
208,479 + GFF5587 0.79 +1.7
208,480 - GFF5587 0.79 +1.0
208,480 - GFF5587 0.79 -0.4
208,480 - GFF5587 0.79 -0.0
208,480 - GFF5587 0.79 -0.2
208,480 - GFF5587 0.79 -0.0
208,587 + GFF5587 0.89 +0.4
208,587 + GFF5587 0.89 -0.8
208,588 - GFF5587 0.90 -1.0
208,660 - +0.3
208,737 + -1.0
208,737 + +0.4
208,769 + -0.3
209,294 + GFF5589 0.22 +0.4
209,294 + GFF5589 0.22 +2.5
209,294 + GFF5589 0.22 +0.5
209,294 + GFF5589 0.22 -0.8
209,294 + GFF5589 0.22 -0.3
209,295 - GFF5589 0.22 -0.2
209,295 - GFF5589 0.22 +0.1
209,295 - GFF5589 0.22 -0.0
209,295 - GFF5589 0.22 -0.2
209,295 - GFF5589 0.22 -1.5
209,295 - GFF5589 0.22 -0.8
209,323 + GFF5589 0.25 +0.7
209,324 - GFF5589 0.25 +0.7
209,324 - GFF5589 0.25 +0.7
209,467 + GFF5589 0.43 -0.8
209,467 + GFF5589 0.43 +1.3
209,467 + GFF5589 0.43 +1.2
209,467 + GFF5589 0.43 -0.6
209,467 + GFF5589 0.43 -1.5
209,467 + GFF5589 0.43 +0.8
209,467 + GFF5589 0.43 -1.0
209,467 + GFF5589 0.43 +0.7
209,467 + GFF5589 0.43 -0.4
209,467 + GFF5589 0.43 +0.1
209,467 + GFF5589 0.43 +1.1
209,467 + GFF5589 0.43 -0.1
209,467 + GFF5589 0.43 +0.2
209,467 + GFF5589 0.43 -0.1
209,467 + GFF5589 0.43 -0.0
209,467 + GFF5589 0.43 +0.1
209,467 + GFF5589 0.43 +0.2
209,468 - GFF5589 0.43 +1.0
209,468 - GFF5589 0.43 +0.2
209,468 - GFF5589 0.43 -0.6
209,468 - GFF5589 0.43 -0.5
209,468 - GFF5589 0.43 -0.8
209,468 - GFF5589 0.43 -1.7
209,468 - GFF5589 0.43 +0.2
209,468 - GFF5589 0.43 +0.7
209,468 - GFF5589 0.43 -0.2
209,468 - GFF5589 0.43 -0.3
209,468 - GFF5589 0.43 +0.6
209,468 - GFF5589 0.43 +1.0
209,468 - GFF5589 0.43 +0.4
209,468 - GFF5589 0.43 -0.7
209,468 - GFF5589 0.43 -0.5
209,518 + GFF5589 0.50 +0.2
209,518 + GFF5589 0.50 -0.0
209,518 + GFF5589 0.50 -0.7
209,518 + GFF5589 0.50 -1.2
209,518 + GFF5589 0.50 -1.2
209,518 + GFF5589 0.50 -0.0
209,518 + GFF5589 0.50 +0.1
209,518 + GFF5589 0.50 -0.3
209,519 - GFF5589 0.50 +0.2
209,519 - GFF5589 0.50 -0.0
209,519 - GFF5589 0.50 +0.5
209,519 - GFF5589 0.50 +1.2
209,519 - GFF5589 0.50 -0.2
209,519 - GFF5589 0.50 +1.3
209,632 + GFF5589 0.64 +0.1
209,633 - GFF5589 0.64 +1.2
209,659 + GFF5589 0.67 +0.2
209,659 + GFF5589 0.67 +0.5
209,659 + GFF5589 0.67 +0.4
209,659 + GFF5589 0.67 -0.8
209,659 + GFF5589 0.67 +0.1
209,659 + GFF5589 0.67 +0.5
209,659 + GFF5589 0.67 +1.0
209,659 + GFF5589 0.67 -0.9
209,660 - GFF5589 0.67 -1.1
209,660 - GFF5589 0.67 -0.3
209,660 - GFF5589 0.67 +0.4
209,660 - GFF5589 0.67 +0.2
209,660 - GFF5589 0.67 +0.7
209,687 - GFF5589 0.71 -0.6

Or see this region's nucleotide sequence