Strain Fitness in Variovorax sp. SCN45 around GFF5536

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5535 and GFF5536 are separated by 145 nucleotidesGFF5536 and GFF5537 overlap by 4 nucleotides GFF5535 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17), at 163,695 to 164,738 GFF5535 GFF5536 - no description, at 164,884 to 165,558 GFF5536 GFF5537 - Cell division inhibitor SulA, at 165,555 to 167,051 GFF5537 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 164.018 kb on + strand, within GFF5535at 164.035 kb on + strand, within GFF5535at 164.036 kb on - strand, within GFF5535at 164.269 kb on + strand, within GFF5535at 164.269 kb on + strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.270 kb on - strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.311 kb on + strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.312 kb on - strand, within GFF5535at 164.450 kb on - strand, within GFF5535at 164.852 kb on - strandat 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.037 kb on + strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.038 kb on - strand, within GFF5536at 165.130 kb on + strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.131 kb on - strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.166 kb on + strand, within GFF5536at 165.167 kb on - strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.193 kb on + strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.194 kb on - strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.208 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.283 kb on + strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.284 kb on - strand, within GFF5536at 165.361 kb on + strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.362 kb on - strand, within GFF5536at 165.495 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.630 kb on + strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.631 kb on - strandat 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.714 kb on + strand, within GFF5537at 165.715 kb on - strand, within GFF5537at 165.724 kb on + strand, within GFF5537at 166.470 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.474 kb on - strand, within GFF5537at 166.474 kb on - strand, within GFF5537

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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164,018 + GFF5535 0.31 +0.7
164,035 + GFF5535 0.33 +0.1
164,036 - GFF5535 0.33 -1.2
164,269 + GFF5535 0.55 +0.8
164,269 + GFF5535 0.55 +0.2
164,270 - GFF5535 0.55 +0.8
164,270 - GFF5535 0.55 -0.6
164,270 - GFF5535 0.55 -1.0
164,270 - GFF5535 0.55 +0.5
164,270 - GFF5535 0.55 +0.6
164,270 - GFF5535 0.55 -0.6
164,270 - GFF5535 0.55 +0.8
164,311 + GFF5535 0.59 -2.5
164,311 + GFF5535 0.59 -1.1
164,311 + GFF5535 0.59 +1.0
164,311 + GFF5535 0.59 -0.0
164,311 + GFF5535 0.59 +0.2
164,311 + GFF5535 0.59 +1.1
164,311 + GFF5535 0.59 +1.6
164,311 + GFF5535 0.59 +2.0
164,311 + GFF5535 0.59 +0.1
164,311 + GFF5535 0.59 -1.2
164,311 + GFF5535 0.59 +0.4
164,312 - GFF5535 0.59 -0.3
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 +0.4
164,312 - GFF5535 0.59 +0.5
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 +0.0
164,312 - GFF5535 0.59 +0.1
164,312 - GFF5535 0.59 -0.4
164,312 - GFF5535 0.59 -0.1
164,312 - GFF5535 0.59 +1.2
164,312 - GFF5535 0.59 -0.3
164,312 - GFF5535 0.59 -0.0
164,312 - GFF5535 0.59 -0.2
164,450 - GFF5535 0.72 +0.3
164,852 - +0.7
165,037 + GFF5536 0.23 +0.4
165,037 + GFF5536 0.23 -0.4
165,037 + GFF5536 0.23 +0.1
165,037 + GFF5536 0.23 +1.6
165,037 + GFF5536 0.23 +0.7
165,037 + GFF5536 0.23 -0.1
165,038 - GFF5536 0.23 -0.5
165,038 - GFF5536 0.23 +0.2
165,130 + GFF5536 0.36 -1.7
165,131 - GFF5536 0.37 +0.0
165,131 - GFF5536 0.37 +0.8
165,166 + GFF5536 0.42 -0.1
165,166 + GFF5536 0.42 -1.0
165,166 + GFF5536 0.42 -0.1
165,166 + GFF5536 0.42 -0.1
165,167 - GFF5536 0.42 -0.4
165,193 + GFF5536 0.46 -0.3
165,193 + GFF5536 0.46 -0.8
165,193 + GFF5536 0.46 -0.5
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 -0.3
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 -0.2
165,193 + GFF5536 0.46 +0.8
165,193 + GFF5536 0.46 +0.2
165,193 + GFF5536 0.46 -0.4
165,193 + GFF5536 0.46 +2.0
165,193 + GFF5536 0.46 +0.1
165,193 + GFF5536 0.46 -0.2
165,194 - GFF5536 0.46 -0.2
165,194 - GFF5536 0.46 +0.3
165,194 - GFF5536 0.46 +0.6
165,208 + GFF5536 0.48 -2.3
165,208 + GFF5536 0.48 -1.6
165,283 + GFF5536 0.59 +1.3
165,283 + GFF5536 0.59 -1.5
165,283 + GFF5536 0.59 -0.5
165,284 - GFF5536 0.59 +0.8
165,284 - GFF5536 0.59 +0.1
165,284 - GFF5536 0.59 +0.7
165,284 - GFF5536 0.59 +0.4
165,284 - GFF5536 0.59 -0.0
165,361 + GFF5536 0.71 +0.4
165,362 - GFF5536 0.71 -1.1
165,362 - GFF5536 0.71 -0.3
165,495 + -0.7
165,630 + -0.7
165,630 + -0.4
165,630 + +0.7
165,630 + +0.1
165,630 + +0.6
165,631 - -1.2
165,631 - +0.4
165,631 - -0.2
165,631 - -0.4
165,631 - +0.3
165,631 - +1.5
165,631 - +0.7
165,714 + GFF5537 0.11 -2.0
165,714 + GFF5537 0.11 -0.8
165,714 + GFF5537 0.11 -0.0
165,714 + GFF5537 0.11 +0.4
165,714 + GFF5537 0.11 -0.1
165,714 + GFF5537 0.11 -0.0
165,714 + GFF5537 0.11 +0.2
165,715 - GFF5537 0.11 -0.7
165,724 + GFF5537 0.11 -0.2
166,470 + GFF5537 0.61 -0.7
166,473 + GFF5537 0.61 +0.1
166,473 + GFF5537 0.61 -0.7
166,473 + GFF5537 0.61 -0.0
166,473 + GFF5537 0.61 -0.4
166,473 + GFF5537 0.61 -1.2
166,473 + GFF5537 0.61 +0.3
166,473 + GFF5537 0.61 +2.0
166,473 + GFF5537 0.61 -0.8
166,473 + GFF5537 0.61 +1.0
166,474 - GFF5537 0.61 +0.3
166,474 - GFF5537 0.61 +1.3

Or see this region's nucleotide sequence