Strain Fitness in Variovorax sp. SCN45 around GFF5484

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5483 and GFF5484 are separated by 287 nucleotidesGFF5484 and GFF5485 are separated by 91 nucleotides GFF5483 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 111,037 to 114,648 GFF5483 GFF5484 - Protein translocase subunit YajC, at 114,936 to 115,271 GFF5484 GFF5485 - Protein translocase subunit SecD, at 115,363 to 117,243 GFF5485 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2 3at 114.058 kb on + strand, within GFF5483at 114.058 kb on + strand, within GFF5483at 114.058 kb on + strand, within GFF5483at 114.059 kb on - strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.070 kb on + strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.071 kb on - strand, within GFF5483at 114.151 kb on + strand, within GFF5483at 114.151 kb on + strand, within GFF5483at 114.151 kb on + strand, within GFF5483at 114.151 kb on + strand, within GFF5483at 114.152 kb on - strand, within GFF5483at 114.152 kb on - strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.172 kb on + strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.173 kb on - strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.184 kb on + strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.185 kb on - strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.253 kb on + strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.254 kb on - strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.265 kb on + strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.266 kb on - strand, within GFF5483at 114.548 kb on - strandat 114.700 kb on - strandat 114.700 kb on - strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.793 kb on + strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 114.794 kb on - strandat 115.047 kb on + strand, within GFF5484at 115.047 kb on + strand, within GFF5484at 115.047 kb on + strand, within GFF5484at 115.047 kb on + strand, within GFF5484at 115.047 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.179 kb on + strand, within GFF5484at 115.269 kb on + strandat 115.269 kb on + strandat 115.269 kb on + strandat 115.269 kb on + strandat 115.269 kb on + strandat 115.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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114,058 + GFF5483 0.84 +0.7
114,058 + GFF5483 0.84 +0.8
114,058 + GFF5483 0.84 -0.1
114,059 - GFF5483 0.84 +0.3
114,070 + GFF5483 0.84 +0.1
114,070 + GFF5483 0.84 +0.4
114,070 + GFF5483 0.84 +0.3
114,070 + GFF5483 0.84 -0.6
114,070 + GFF5483 0.84 +0.8
114,070 + GFF5483 0.84 -2.3
114,070 + GFF5483 0.84 +0.7
114,070 + GFF5483 0.84 -1.7
114,070 + GFF5483 0.84 -0.0
114,071 - GFF5483 0.84 -0.3
114,071 - GFF5483 0.84 -0.5
114,071 - GFF5483 0.84 -0.8
114,071 - GFF5483 0.84 -0.1
114,071 - GFF5483 0.84 -0.1
114,071 - GFF5483 0.84 -0.1
114,071 - GFF5483 0.84 -0.3
114,071 - GFF5483 0.84 +0.4
114,071 - GFF5483 0.84 -0.1
114,071 - GFF5483 0.84 -1.4
114,071 - GFF5483 0.84 -1.6
114,151 + GFF5483 0.86 -0.8
114,151 + GFF5483 0.86 +0.3
114,151 + GFF5483 0.86 +0.8
114,151 + GFF5483 0.86 -1.0
114,152 - GFF5483 0.86 -0.4
114,152 - GFF5483 0.86 -1.3
114,172 + GFF5483 0.87 -0.1
114,172 + GFF5483 0.87 -0.6
114,172 + GFF5483 0.87 +0.1
114,172 + GFF5483 0.87 +1.4
114,172 + GFF5483 0.87 -0.1
114,172 + GFF5483 0.87 -1.3
114,172 + GFF5483 0.87 -0.2
114,172 + GFF5483 0.87 -0.8
114,172 + GFF5483 0.87 -0.0
114,172 + GFF5483 0.87 -0.5
114,172 + GFF5483 0.87 -0.3
114,172 + GFF5483 0.87 +0.1
114,172 + GFF5483 0.87 -0.0
114,172 + GFF5483 0.87 -1.2
114,172 + GFF5483 0.87 -0.6
114,173 - GFF5483 0.87 -0.0
114,173 - GFF5483 0.87 +0.6
114,173 - GFF5483 0.87 +0.4
114,173 - GFF5483 0.87 -1.6
114,173 - GFF5483 0.87 -0.0
114,173 - GFF5483 0.87 -0.7
114,173 - GFF5483 0.87 +0.2
114,173 - GFF5483 0.87 -1.3
114,173 - GFF5483 0.87 -0.3
114,184 + GFF5483 0.87 -0.0
114,184 + GFF5483 0.87 +0.2
114,184 + GFF5483 0.87 -0.7
114,184 + GFF5483 0.87 +0.5
114,184 + GFF5483 0.87 +0.8
114,184 + GFF5483 0.87 -1.4
114,184 + GFF5483 0.87 -0.5
114,184 + GFF5483 0.87 -0.8
114,184 + GFF5483 0.87 -1.2
114,184 + GFF5483 0.87 +1.6
114,185 - GFF5483 0.87 -0.4
114,185 - GFF5483 0.87 -1.9
114,185 - GFF5483 0.87 +0.3
114,185 - GFF5483 0.87 -0.2
114,185 - GFF5483 0.87 -0.9
114,185 - GFF5483 0.87 -0.3
114,253 + GFF5483 0.89 -2.1
114,253 + GFF5483 0.89 -0.1
114,253 + GFF5483 0.89 -0.4
114,253 + GFF5483 0.89 -0.1
114,253 + GFF5483 0.89 +0.8
114,253 + GFF5483 0.89 +0.1
114,253 + GFF5483 0.89 +0.2
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 -0.9
114,253 + GFF5483 0.89 +0.7
114,253 + GFF5483 0.89 -2.3
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 +0.4
114,253 + GFF5483 0.89 -1.4
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 -1.3
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 +2.6
114,253 + GFF5483 0.89 +0.2
114,253 + GFF5483 0.89 +0.1
114,253 + GFF5483 0.89 -0.6
114,253 + GFF5483 0.89 -0.7
114,253 + GFF5483 0.89 +0.1
114,253 + GFF5483 0.89 -0.4
114,253 + GFF5483 0.89 -1.0
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 -0.5
114,253 + GFF5483 0.89 -0.6
114,253 + GFF5483 0.89 +0.1
114,253 + GFF5483 0.89 -0.1
114,253 + GFF5483 0.89 -0.3
114,253 + GFF5483 0.89 -0.5
114,254 - GFF5483 0.89 +0.4
114,254 - GFF5483 0.89 +0.1
114,254 - GFF5483 0.89 -0.4
114,254 - GFF5483 0.89 -0.6
114,254 - GFF5483 0.89 -0.3
114,254 - GFF5483 0.89 -0.5
114,254 - GFF5483 0.89 +1.0
114,254 - GFF5483 0.89 -1.6
114,254 - GFF5483 0.89 +0.2
114,254 - GFF5483 0.89 -0.3
114,254 - GFF5483 0.89 +0.0
114,254 - GFF5483 0.89 +0.1
114,254 - GFF5483 0.89 -0.5
114,254 - GFF5483 0.89 -0.7
114,254 - GFF5483 0.89 +0.1
114,254 - GFF5483 0.89 -0.7
114,254 - GFF5483 0.89 +0.5
114,254 - GFF5483 0.89 +0.6
114,254 - GFF5483 0.89 +0.4
114,254 - GFF5483 0.89 +0.2
114,254 - GFF5483 0.89 +0.7
114,254 - GFF5483 0.89 -0.7
114,254 - GFF5483 0.89 +0.6
114,254 - GFF5483 0.89 -0.1
114,254 - GFF5483 0.89 -1.2
114,254 - GFF5483 0.89 -0.9
114,254 - GFF5483 0.89 +0.5
114,254 - GFF5483 0.89 +0.4
114,254 - GFF5483 0.89 +0.7
114,254 - GFF5483 0.89 -1.5
114,254 - GFF5483 0.89 +0.6
114,254 - GFF5483 0.89 -0.4
114,254 - GFF5483 0.89 +0.1
114,254 - GFF5483 0.89 -0.4
114,254 - GFF5483 0.89 +0.0
114,254 - GFF5483 0.89 -0.6
114,265 + GFF5483 0.89 -0.9
114,265 + GFF5483 0.89 -0.1
114,265 + GFF5483 0.89 -0.6
114,265 + GFF5483 0.89 -0.3
114,265 + GFF5483 0.89 +0.4
114,265 + GFF5483 0.89 -0.6
114,265 + GFF5483 0.89 +0.8
114,265 + GFF5483 0.89 -1.0
114,265 + GFF5483 0.89 -0.1
114,265 + GFF5483 0.89 -1.2
114,265 + GFF5483 0.89 +0.4
114,265 + GFF5483 0.89 +0.2
114,265 + GFF5483 0.89 +0.7
114,265 + GFF5483 0.89 -0.3
114,265 + GFF5483 0.89 +0.3
114,265 + GFF5483 0.89 +0.6
114,265 + GFF5483 0.89 -0.4
114,265 + GFF5483 0.89 +0.1
114,265 + GFF5483 0.89 -0.2
114,265 + GFF5483 0.89 -0.3
114,265 + GFF5483 0.89 -0.7
114,265 + GFF5483 0.89 +0.0
114,265 + GFF5483 0.89 -1.0
114,266 - GFF5483 0.89 -0.0
114,266 - GFF5483 0.89 -0.0
114,266 - GFF5483 0.89 +0.9
114,266 - GFF5483 0.89 +0.7
114,266 - GFF5483 0.89 -1.3
114,266 - GFF5483 0.89 -1.7
114,266 - GFF5483 0.89 +3.0
114,548 - +0.3
114,700 - -0.6
114,700 - +0.4
114,793 + -1.0
114,793 + -0.2
114,793 + -1.7
114,793 + -0.2
114,793 + +0.3
114,793 + +1.0
114,793 + -0.7
114,793 + -1.2
114,793 + -0.4
114,793 + -0.0
114,793 + -0.9
114,793 + -1.0
114,793 + +0.8
114,793 + -1.0
114,793 + -0.3
114,793 + +0.8
114,794 - +0.2
114,794 - +0.6
114,794 - -0.1
114,794 - +0.6
114,794 - +0.3
114,794 - -0.6
114,794 - +0.5
114,794 - -0.1
114,794 - +0.2
114,794 - -0.6
114,794 - -0.3
114,794 - -0.9
115,047 + GFF5484 0.33 -1.7
115,047 + GFF5484 0.33 -1.9
115,047 + GFF5484 0.33 -0.2
115,047 + GFF5484 0.33 -0.2
115,047 + GFF5484 0.33 -0.1
115,179 + GFF5484 0.72 +0.8
115,179 + GFF5484 0.72 -1.3
115,179 + GFF5484 0.72 -1.0
115,179 + GFF5484 0.72 -0.8
115,179 + GFF5484 0.72 -1.3
115,179 + GFF5484 0.72 +0.4
115,179 + GFF5484 0.72 -0.5
115,269 + +1.0
115,269 + +1.4
115,269 + +0.0
115,269 + -1.3
115,269 + +0.7
115,269 + +0.2

Or see this region's nucleotide sequence