Strain Fitness in Variovorax sp. SCN45 around GFF5279

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
146,407	+		GFF5277	0.69	+0.0
146,407	+		GFF5277	0.69	-1.2
146,408	-		GFF5277	0.69	-1.2
146,408	-		GFF5277	0.69	-2.0
146,604	+				+0.5
146,605	-				-1.4
146,698	+				-1.2
146,699	-				-1.4
146,699	-				-0.6
146,699	-				-1.2
146,699	-				-2.5
147,031	+		GFF5278	0.53	-1.1
147,032	-		GFF5278	0.53	+0.1
147,077	-		GFF5278	0.60	+0.4
147,077	-		GFF5278	0.60	-2.0
147,088	+		GFF5278	0.61	-1.7
147,217	+		GFF5278	0.80	-0.7
147,217	+		GFF5278	0.80	-0.8
147,218	-		GFF5278	0.81	-1.0
147,218	-		GFF5278	0.81	-0.5
147,218	-		GFF5278	0.81	-0.4
147,218	-		GFF5278	0.81	+0.8
147,661	+		GFF5279	0.29	-1.6
147,662	-		GFF5279	0.29	-3.5
147,670	+		GFF5279	0.30	-1.9
147,670	+		GFF5279	0.30	-1.1
147,670	+		GFF5279	0.30	-1.8
147,670	+		GFF5279	0.30	-1.4
147,670	+		GFF5279	0.30	-0.5
147,671	-		GFF5279	0.30	-1.5
147,671	-		GFF5279	0.30	-0.2
147,671	-		GFF5279	0.30	-2.1
147,671	-		GFF5279	0.30	-1.2
147,671	-		GFF5279	0.30	+0.6
147,880	+		GFF5279	0.52	-2.1
148,074	+		GFF5279	0.72	+0.8
148,074	+		GFF5279	0.72	-1.5
148,075	-		GFF5279	0.72	-1.0
148,075	-		GFF5279	0.72	+2.8
148,323	+				+0.1
148,324	-				+0.3
148,324	-				-0.9
148,447	-				-1.2
148,533	+		GFF5280	0.18	-1.0
148,533	+		GFF5280	0.18	-1.0
148,533	+		GFF5280	0.18	-0.3
148,533	+		GFF5280	0.18	-1.5
148,534	-		GFF5280	0.18	-0.2
148,534	-		GFF5280	0.18	-0.5
148,534	-		GFF5280	0.18	-0.9
149,175	+		GFF5280	0.85	-1.7
149,175	+		GFF5280	0.85	-1.4
149,175	+		GFF5280	0.85	-0.0
149,175	+		GFF5280	0.85	-0.2
149,175	+		GFF5280	0.85	-1.7
149,175	+		GFF5280	0.85	-0.5
149,176	-		GFF5280	0.85	+0.5
149,176	-		GFF5280	0.85	+0.2
149,176	-		GFF5280	0.85	-0.2
149,176	-		GFF5280	0.85	-0.7
149,193	+		GFF5280	0.87	-0.9
149,313	+				+0.2
149,313	+				+0.6
149,313	+				-0.1
149,313	+				-0.3
149,313	+				-1.1
149,313	+				-0.6
149,314	-				-0.4
149,314	-				-1.9
149,314	-				-0.7
149,317	+				-0.7
149,317	+				+0.1
149,317	+				+0.5
149,317	+				-0.2
149,317	+				+0.2
149,317	+				-0.2
149,318	-				+0.6
149,318	-				+1.0
149,318	-				-0.5
149,318	-				-2.0
149,318	-				-0.2
149,318	-				+1.0
149,345	+				+0.5
149,345	+				+0.2
149,346	-				-0.3
149,346	-				-0.4
149,346	-				-0.7
149,346	-				-0.9