Strain Fitness in Variovorax sp. SCN45 around GFF5047

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5045 and GFF5046 are separated by 18 nucleotidesGFF5046 and GFF5047 are separated by 28 nucleotidesGFF5047 and GFF5048 are separated by 22 nucleotides GFF5045 - ABC transporter, substrate-binding protein (cluster 9, phospholipid), at 146,965 to 147,924 GFF5045 GFF5046 - putative lipoprotein, at 147,943 to 148,656 GFF5046 GFF5047 - hypothetical protein, at 148,685 to 148,906 GFF5047 GFF5048 - no description, at 148,929 to 149,945 GFF5048 Position (kb) 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 147.737 kb on - strand, within GFF5045at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.022 kb on + strand, within GFF5046at 148.023 kb on - strand, within GFF5046at 148.087 kb on + strand, within GFF5046at 148.088 kb on - strand, within GFF5046at 148.423 kb on + strand, within GFF5046at 148.423 kb on + strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.424 kb on - strand, within GFF5046at 148.654 kb on + strandat 148.654 kb on + strandat 148.655 kb on - strandat 148.655 kb on - strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.679 kb on + strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.680 kb on - strandat 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.863 kb on + strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 148.864 kb on - strand, within GFF5047at 149.021 kb on + strandat 149.021 kb on + strandat 149.021 kb on + strandat 149.021 kb on + strandat 149.022 kb on - strandat 149.022 kb on - strandat 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.041 kb on + strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.042 kb on - strand, within GFF5048at 149.057 kb on - strand, within GFF5048at 149.112 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.152 kb on + strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.153 kb on - strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.156 kb on + strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.157 kb on - strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.393 kb on + strand, within GFF5048at 149.394 kb on - strand, within GFF5048at 149.394 kb on - strand, within GFF5048at 149.454 kb on + strand, within GFF5048at 149.455 kb on - strand, within GFF5048at 149.455 kb on - strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.534 kb on + strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.535 kb on - strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.655 kb on + strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.656 kb on - strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.700 kb on + strand, within GFF5048at 149.701 kb on + strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.701 kb on - strand, within GFF5048at 149.851 kb on + strandat 149.852 kb on - strandat 149.852 kb on - strandat 149.891 kb on + strandat 149.891 kb on + strandat 149.892 kb on - strandat 149.892 kb on - strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.893 kb on + strandat 149.894 kb on - strandat 149.894 kb on - strandat 149.894 kb on - strandat 149.894 kb on - strandat 149.894 kb on - strandat 149.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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147,737 - GFF5045 0.80 -0.6
148,022 + GFF5046 0.11 -0.8
148,022 + GFF5046 0.11 -1.5
148,022 + GFF5046 0.11 -0.7
148,022 + GFF5046 0.11 +1.9
148,022 + GFF5046 0.11 -0.3
148,022 + GFF5046 0.11 -0.4
148,023 - GFF5046 0.11 -2.2
148,087 + GFF5046 0.20 -1.4
148,088 - GFF5046 0.20 -1.3
148,423 + GFF5046 0.67 -0.2
148,423 + GFF5046 0.67 -0.5
148,424 - GFF5046 0.67 -0.0
148,424 - GFF5046 0.67 -0.5
148,424 - GFF5046 0.67 +1.5
148,654 + +1.3
148,654 + -0.8
148,655 - -0.0
148,655 - -0.7
148,679 + +0.8
148,679 + +0.9
148,679 + +0.8
148,679 + -1.3
148,679 + +1.9
148,679 + +0.4
148,679 + +0.7
148,679 + -1.0
148,679 + +0.0
148,679 + -0.4
148,679 + -1.2
148,679 + +0.2
148,679 + +0.9
148,679 + -0.4
148,680 - +0.2
148,680 - +2.3
148,680 - -0.2
148,680 - -1.6
148,680 - -0.6
148,680 - -0.5
148,680 - -0.3
148,680 - -0.3
148,680 - +0.1
148,680 - -0.5
148,680 - +1.1
148,680 - -0.1
148,680 - +0.0
148,680 - +0.7
148,680 - -2.2
148,680 - +0.2
148,863 + GFF5047 0.80 +1.6
148,863 + GFF5047 0.80 +1.2
148,863 + GFF5047 0.80 -0.8
148,863 + GFF5047 0.80 -0.6
148,863 + GFF5047 0.80 +0.1
148,863 + GFF5047 0.80 -0.6
148,863 + GFF5047 0.80 -1.7
148,864 - GFF5047 0.81 -0.0
148,864 - GFF5047 0.81 +0.5
148,864 - GFF5047 0.81 +0.2
148,864 - GFF5047 0.81 +0.8
149,021 + +0.1
149,021 + -0.1
149,021 + -1.8
149,021 + +0.1
149,022 - +0.9
149,022 - +0.2
149,041 + GFF5048 0.11 -0.3
149,041 + GFF5048 0.11 -0.5
149,041 + GFF5048 0.11 +0.9
149,041 + GFF5048 0.11 +0.5
149,041 + GFF5048 0.11 +0.3
149,041 + GFF5048 0.11 +0.7
149,041 + GFF5048 0.11 -0.1
149,041 + GFF5048 0.11 -0.8
149,042 - GFF5048 0.11 -0.6
149,042 - GFF5048 0.11 +0.6
149,042 - GFF5048 0.11 -0.6
149,042 - GFF5048 0.11 -0.5
149,042 - GFF5048 0.11 +1.6
149,042 - GFF5048 0.11 -1.3
149,057 - GFF5048 0.13 -0.1
149,112 + GFF5048 0.18 -0.2
149,152 + GFF5048 0.22 -0.4
149,152 + GFF5048 0.22 -1.0
149,152 + GFF5048 0.22 -0.7
149,152 + GFF5048 0.22 +0.3
149,152 + GFF5048 0.22 -0.3
149,152 + GFF5048 0.22 -0.3
149,152 + GFF5048 0.22 -0.1
149,152 + GFF5048 0.22 +0.1
149,152 + GFF5048 0.22 +0.2
149,153 - GFF5048 0.22 +0.6
149,153 - GFF5048 0.22 -1.3
149,153 - GFF5048 0.22 -0.2
149,153 - GFF5048 0.22 +0.7
149,153 - GFF5048 0.22 -0.1
149,153 - GFF5048 0.22 +0.2
149,153 - GFF5048 0.22 +0.2
149,153 - GFF5048 0.22 -0.8
149,153 - GFF5048 0.22 -0.5
149,153 - GFF5048 0.22 -1.4
149,153 - GFF5048 0.22 -0.1
149,153 - GFF5048 0.22 -0.4
149,153 - GFF5048 0.22 +0.5
149,153 - GFF5048 0.22 -0.8
149,156 + GFF5048 0.22 -0.6
149,156 + GFF5048 0.22 -1.0
149,156 + GFF5048 0.22 +1.5
149,156 + GFF5048 0.22 +1.0
149,156 + GFF5048 0.22 -0.7
149,156 + GFF5048 0.22 +0.0
149,156 + GFF5048 0.22 -0.6
149,156 + GFF5048 0.22 -0.4
149,156 + GFF5048 0.22 -0.1
149,156 + GFF5048 0.22 +0.3
149,156 + GFF5048 0.22 -0.7
149,157 - GFF5048 0.22 -1.0
149,157 - GFF5048 0.22 -1.3
149,157 - GFF5048 0.22 +0.9
149,157 - GFF5048 0.22 -1.3
149,157 - GFF5048 0.22 -0.6
149,157 - GFF5048 0.22 +0.0
149,157 - GFF5048 0.22 -0.0
149,157 - GFF5048 0.22 +0.0
149,157 - GFF5048 0.22 -0.6
149,157 - GFF5048 0.22 +0.3
149,157 - GFF5048 0.22 -0.3
149,393 + GFF5048 0.46 -1.4
149,393 + GFF5048 0.46 +0.0
149,393 + GFF5048 0.46 -0.1
149,393 + GFF5048 0.46 -0.4
149,393 + GFF5048 0.46 +0.1
149,394 - GFF5048 0.46 +0.0
149,394 - GFF5048 0.46 +0.7
149,454 + GFF5048 0.52 +0.0
149,455 - GFF5048 0.52 -0.9
149,455 - GFF5048 0.52 +0.9
149,534 + GFF5048 0.59 -1.4
149,534 + GFF5048 0.59 -1.1
149,534 + GFF5048 0.59 -1.8
149,534 + GFF5048 0.59 +0.6
149,534 + GFF5048 0.59 +1.9
149,535 - GFF5048 0.60 -0.3
149,535 - GFF5048 0.60 -0.1
149,535 - GFF5048 0.60 -0.4
149,655 + GFF5048 0.71 -1.4
149,655 + GFF5048 0.71 +1.2
149,655 + GFF5048 0.71 +0.7
149,655 + GFF5048 0.71 -0.7
149,655 + GFF5048 0.71 +0.4
149,655 + GFF5048 0.71 -0.6
149,656 - GFF5048 0.71 -0.5
149,656 - GFF5048 0.71 -2.3
149,656 - GFF5048 0.71 +1.2
149,656 - GFF5048 0.71 -0.7
149,700 + GFF5048 0.76 -0.1
149,700 + GFF5048 0.76 -0.4
149,700 + GFF5048 0.76 -0.8
149,700 + GFF5048 0.76 -0.2
149,700 + GFF5048 0.76 +0.1
149,700 + GFF5048 0.76 -1.9
149,700 + GFF5048 0.76 -0.1
149,700 + GFF5048 0.76 -0.9
149,700 + GFF5048 0.76 +0.5
149,700 + GFF5048 0.76 -0.3
149,700 + GFF5048 0.76 +0.2
149,700 + GFF5048 0.76 -0.4
149,700 + GFF5048 0.76 -0.5
149,700 + GFF5048 0.76 +0.9
149,700 + GFF5048 0.76 +1.5
149,700 + GFF5048 0.76 -0.2
149,700 + GFF5048 0.76 -0.4
149,700 + GFF5048 0.76 +0.4
149,700 + GFF5048 0.76 +0.1
149,700 + GFF5048 0.76 -0.2
149,701 + GFF5048 0.76 -0.2
149,701 - GFF5048 0.76 -0.3
149,701 - GFF5048 0.76 -0.2
149,701 - GFF5048 0.76 +0.9
149,701 - GFF5048 0.76 -0.9
149,701 - GFF5048 0.76 -0.3
149,701 - GFF5048 0.76 -0.3
149,701 - GFF5048 0.76 -0.4
149,701 - GFF5048 0.76 -0.5
149,701 - GFF5048 0.76 -1.0
149,701 - GFF5048 0.76 -0.3
149,701 - GFF5048 0.76 -0.2
149,701 - GFF5048 0.76 +0.3
149,701 - GFF5048 0.76 -0.7
149,701 - GFF5048 0.76 -0.3
149,701 - GFF5048 0.76 +0.1
149,701 - GFF5048 0.76 +0.3
149,701 - GFF5048 0.76 +1.3
149,701 - GFF5048 0.76 +0.7
149,701 - GFF5048 0.76 +0.2
149,701 - GFF5048 0.76 -0.7
149,701 - GFF5048 0.76 -0.8
149,701 - GFF5048 0.76 -1.4
149,701 - GFF5048 0.76 -0.1
149,851 + -0.4
149,852 - +0.2
149,852 - -0.4
149,891 + +0.1
149,891 + -0.8
149,892 - -0.8
149,892 - -0.9
149,893 + -0.4
149,893 + -0.2
149,893 + -0.2
149,893 + -1.1
149,893 + +0.9
149,893 + +1.1
149,893 + -0.3
149,893 + -0.2
149,893 + +0.3
149,893 + +1.9
149,894 - -1.0
149,894 - +1.9
149,894 - -0.0
149,894 - +0.3
149,894 - +0.6
149,894 - +0.4

Or see this region's nucleotide sequence