Strain Fitness in Variovorax sp. SCN45 around GFF5043

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
144,345	+		GFF5042	0.57	+0.2
144,345	+		GFF5042	0.57	-1.4
144,346	-		GFF5042	0.57	-0.7
144,346	-		GFF5042	0.57	+1.2
144,654	+		GFF5042	0.90	-0.5
144,654	+		GFF5042	0.90	-1.9
144,654	+		GFF5042	0.90	-1.7
144,669	+				+0.1
144,670	-				-0.3
144,670	-				-0.7
144,755	+				-0.4
144,755	+				-0.8
144,755	+				-0.2
144,756	-				+1.1
144,756	-				-0.3
144,801	-				-0.9
144,832	-				-1.1
144,859	+				+0.3
144,859	+				-0.9
144,859	+				-2.1
144,860	-				-1.1
144,860	-				-0.6
144,878	+				+0.1
144,879	-				-0.1
144,911	-				-1.6
144,911	-				-0.7
144,911	-				-0.0
144,931	+				-2.2
144,931	+				-0.7
144,931	+				-0.4
144,931	+				-0.2
144,931	+				-0.2
144,931	+				-0.3
144,931	+				-0.3
144,931	+				-0.1
144,931	+				+0.0
144,931	+				-0.0
144,931	+				-0.3
144,931	+				-0.3
144,932	-				-0.4
144,932	-				-0.5
144,932	-				-0.0
144,932	-				-0.0
144,932	-				-1.8
145,259	+		GFF5043	0.28	-0.1
145,259	+		GFF5043	0.28	+0.2
145,259	+		GFF5043	0.28	+0.7
145,259	+		GFF5043	0.28	+1.0
145,259	+		GFF5043	0.28	-0.8
145,259	+		GFF5043	0.28	-0.4
145,259	+		GFF5043	0.28	-0.4
145,259	+		GFF5043	0.28	-1.1
145,259	+		GFF5043	0.28	+0.8
145,260	-		GFF5043	0.28	-0.5
145,260	-		GFF5043	0.28	-1.7
145,260	-		GFF5043	0.28	+0.1
145,260	-		GFF5043	0.28	-0.7
145,260	-		GFF5043	0.28	-0.3
145,260	-		GFF5043	0.28	-0.3
145,451	+		GFF5043	0.44	-0.6
145,452	-		GFF5043	0.45	-0.6
145,452	-		GFF5043	0.45	+1.2
145,452	-		GFF5043	0.45	-1.1
145,497	+		GFF5043	0.48	-0.0
145,498	-		GFF5043	0.49	-0.3
145,498	-		GFF5043	0.49	-0.5
145,520	+		GFF5043	0.50	+0.4
145,521	-		GFF5043	0.50	-1.1
145,521	-		GFF5043	0.50	-0.8
145,521	-		GFF5043	0.50	-0.2
145,521	-		GFF5043	0.50	-0.5
145,716	+		GFF5043	0.67	-1.1
145,716	+		GFF5043	0.67	-1.1
145,843	+		GFF5043	0.78	+0.2
145,843	+		GFF5043	0.78	-0.9
145,843	+		GFF5043	0.78	-1.0
145,843	+		GFF5043	0.78	-2.0
145,843	+		GFF5043	0.78	+0.1
145,843	+		GFF5043	0.78	-0.5
145,844	-		GFF5043	0.78	+0.9
145,844	-		GFF5043	0.78	-0.4
145,856	+		GFF5043	0.79	+0.1
145,888	+		GFF5043	0.82	-0.4
145,888	+		GFF5043	0.82	-1.1
145,888	+		GFF5043	0.82	-1.1
145,888	+		GFF5043	0.82	-1.3
145,889	-		GFF5043	0.82	+0.2
145,889	-		GFF5043	0.82	+0.9
145,889	-		GFF5043	0.82	-2.2
145,958	+		GFF5043	0.88	-0.9
145,958	+		GFF5043	0.88	-0.7
145,958	+		GFF5043	0.88	-0.0
145,958	+		GFF5043	0.88	-0.8
145,959	-		GFF5043	0.88	+0.1
145,959	-		GFF5043	0.88	-0.3
145,959	-		GFF5043	0.88	-0.6
145,959	-		GFF5043	0.88	-0.3
145,959	-		GFF5043	0.88	-0.1
145,959	-		GFF5043	0.88	-0.3
146,029	+				-1.5
146,029	+				-0.1
146,030	-				-0.9
146,030	-				-0.3
146,030	-				+1.1
146,030	-				+0.5
146,847	+		GFF5044	0.88	-0.6
146,847	+		GFF5044	0.88	-1.0
146,847	+		GFF5044	0.88	-0.0
146,847	+		GFF5044	0.88	+0.6
146,848	-		GFF5044	0.88	+1.1
146,848	-		GFF5044	0.88	+0.3
146,953	+				-0.4
146,953	+				+0.5
146,953	+				-1.1
146,953	+				+0.7
146,953	+				-0.1
146,953	+				+0.2
146,954	-				+1.9
146,954	-				+1.2
146,957	+				-1.7
146,957	+				-1.9
146,957	+				+0.9
146,957	+				-0.1
146,957	+				-1.8
146,958	-				-0.3
146,958	-				+0.6
146,958	-				-0.1
146,958	-				-0.7
146,958	-				-0.4
146,958	-				+0.8
146,958	-				+0.3
146,958	-				-0.7
146,958	-				-0.5
146,969	-				+1.0
147,076	+		GFF5045	0.12	-0.1