Strain Fitness in Variovorax sp. SCN45 around GFF4703

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4702 and GFF4703 are separated by 29 nucleotidesGFF4703 and GFF4704 are separated by 113 nucleotidesGFF4704 and GFF4705 overlap by 1 nucleotides GFF4702 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 65,728 to 66,867 GFF4702 GFF4703 - Xylitol dehydrogenase (EC 1.1.1.9), at 66,897 to 67,946 GFF4703 GFF4704 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 68,060 to 68,884 GFF4704 GFF4705 - Monooxygenase, flavin-binding family, at 68,884 to 70,212 GFF4705 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.013 kb on + strand, within GFF4702at 66.013 kb on + strand, within GFF4702at 66.014 kb on - strand, within GFF4702at 66.023 kb on - strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.682 kb on + strand, within GFF4702at 67.026 kb on + strand, within GFF4703at 67.026 kb on + strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.030 kb on - strand, within GFF4703at 67.030 kb on - strand, within GFF4703at 67.053 kb on + strand, within GFF4703at 67.053 kb on + strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.694 kb on - strand, within GFF4703at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.231 kb on + strand, within GFF4704at 68.342 kb on + strand, within GFF4704at 68.550 kb on - strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.615 kb on + strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.616 kb on - strand, within GFF4704at 68.617 kb on + strand, within GFF4704

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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66,013 + GFF4702 0.25 -1.1
66,013 + GFF4702 0.25 -0.7
66,014 - GFF4702 0.25 -0.4
66,023 - GFF4702 0.26 +2.1
66,328 + GFF4702 0.53 -0.7
66,328 + GFF4702 0.53 -1.1
66,328 + GFF4702 0.53 -0.9
66,328 + GFF4702 0.53 -0.1
66,328 + GFF4702 0.53 +0.5
66,328 + GFF4702 0.53 -0.1
66,328 + GFF4702 0.53 -0.0
66,329 - GFF4702 0.53 +0.8
66,329 - GFF4702 0.53 -0.9
66,329 - GFF4702 0.53 -0.4
66,329 - GFF4702 0.53 -0.0
66,682 + GFF4702 0.84 +0.5
67,026 + GFF4703 0.12 +0.1
67,026 + GFF4703 0.12 -0.2
67,027 - GFF4703 0.12 +0.2
67,027 - GFF4703 0.12 -0.6
67,027 - GFF4703 0.12 +0.1
67,030 - GFF4703 0.13 -0.2
67,030 - GFF4703 0.13 -0.3
67,053 + GFF4703 0.15 -1.3
67,053 + GFF4703 0.15 -0.6
67,054 - GFF4703 0.15 -0.3
67,054 - GFF4703 0.15 -0.7
67,054 - GFF4703 0.15 -0.4
67,195 + GFF4703 0.28 -0.2
67,195 + GFF4703 0.28 -1.9
67,195 + GFF4703 0.28 -0.0
67,196 - GFF4703 0.28 -0.8
67,196 - GFF4703 0.28 +0.0
67,202 + GFF4703 0.29 +0.3
67,202 + GFF4703 0.29 -0.4
67,202 + GFF4703 0.29 -0.4
67,202 + GFF4703 0.29 +0.5
67,202 + GFF4703 0.29 -0.9
67,202 + GFF4703 0.29 -3.5
67,203 - GFF4703 0.29 -0.4
67,203 - GFF4703 0.29 -1.0
67,206 + GFF4703 0.29 -1.7
67,206 + GFF4703 0.29 +0.2
67,206 + GFF4703 0.29 +0.0
67,206 + GFF4703 0.29 -0.4
67,206 + GFF4703 0.29 +1.3
67,206 + GFF4703 0.29 -1.0
67,206 + GFF4703 0.29 -0.9
67,206 + GFF4703 0.29 +0.6
67,206 + GFF4703 0.29 +0.4
67,207 - GFF4703 0.30 -1.3
67,207 - GFF4703 0.30 -0.2
67,207 - GFF4703 0.30 -0.4
67,207 - GFF4703 0.30 -0.3
67,207 - GFF4703 0.30 -0.4
67,207 - GFF4703 0.30 +0.4
67,694 - GFF4703 0.76 -0.7
68,231 + GFF4704 0.21 +0.5
68,231 + GFF4704 0.21 -0.1
68,231 + GFF4704 0.21 -0.2
68,231 + GFF4704 0.21 +0.4
68,231 + GFF4704 0.21 +1.0
68,342 + GFF4704 0.34 +0.7
68,550 - GFF4704 0.59 -0.1
68,615 + GFF4704 0.67 -0.7
68,615 + GFF4704 0.67 -0.9
68,615 + GFF4704 0.67 -1.1
68,615 + GFF4704 0.67 -0.0
68,615 + GFF4704 0.67 -1.7
68,615 + GFF4704 0.67 +0.2
68,615 + GFF4704 0.67 -1.1
68,616 - GFF4704 0.67 -0.3
68,616 - GFF4704 0.67 +0.7
68,616 - GFF4704 0.67 -0.9
68,616 - GFF4704 0.67 -0.1
68,616 - GFF4704 0.67 +0.3
68,617 + GFF4704 0.68 -0.6

Or see this region's nucleotide sequence