Strain Fitness in Variovorax sp. SCN45 around GFF4695

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
57,879	+		GFF4693	0.56	+0.2
57,879	+		GFF4693	0.56	-0.5
57,879	+		GFF4693	0.56	+0.1
57,879	+		GFF4693	0.56	+0.1
57,879	+		GFF4693	0.56	-1.0
57,879	+		GFF4693	0.56	-0.0
57,879	+		GFF4693	0.56	+0.1
57,879	+		GFF4693	0.56	-0.9
57,879	+		GFF4693	0.56	-0.7
57,879	+		GFF4693	0.56	+0.7
57,879	+		GFF4693	0.56	-0.1
57,880	-		GFF4693	0.57	+1.1
57,880	-		GFF4693	0.57	-0.2
57,880	-		GFF4693	0.57	-0.0
57,880	-		GFF4693	0.57	-0.7
57,880	-		GFF4693	0.57	+0.7
57,880	-		GFF4693	0.57	+0.2
57,880	-		GFF4693	0.57	-0.7
57,880	-		GFF4693	0.57	+0.2
57,880	-		GFF4693	0.57	-0.0
57,880	-		GFF4693	0.57	+1.5
57,880	-		GFF4693	0.57	+2.5
58,155	+				-0.1
58,155	+				-0.3
58,156	-				+1.0
58,156	-				+0.2
58,221	+				-0.6
58,221	+				-0.1
58,221	+				+0.3
58,222	-				-0.0
58,298	+				-0.3
58,298	+				-0.9
58,298	+				-0.5
58,298	+				-0.9
58,298	+				-0.1
58,298	+				+1.1
58,299	-				-2.3
58,299	-				-0.5
58,299	-				+0.2
58,302	+				+0.0
58,302	+				-0.8
58,302	+				-0.7
58,303	-				+0.5
58,303	-				+0.0
58,303	-				-0.1
58,303	-				+0.2
58,303	-				-1.1
58,303	-				-1.9
58,303	-				+0.1
58,521	+		GFF4694	0.61	-0.8
58,521	+		GFF4694	0.61	-1.1
58,521	+		GFF4694	0.61	+1.1
58,521	+		GFF4694	0.61	+0.7
58,522	-		GFF4694	0.62	-0.8
58,522	-		GFF4694	0.62	-0.6
58,522	-		GFF4694	0.62	-0.1
58,552	+		GFF4694	0.70	-0.7
58,553	-		GFF4694	0.70	+0.1
58,553	-		GFF4694	0.70	+0.7
58,553	-		GFF4694	0.70	+1.5
58,591	-		GFF4694	0.80	-1.3
58,662	+				-0.4
58,746	+		GFF4695	0.11	+0.3
58,747	-		GFF4695	0.12	-0.3
58,747	-		GFF4695	0.12	-0.1
58,773	+		GFF4695	0.16	+0.1
59,002	+		GFF4695	0.55	+0.7
59,002	+		GFF4695	0.55	+1.5
59,002	+		GFF4695	0.55	+0.7
59,002	+		GFF4695	0.55	+0.5
59,002	+		GFF4695	0.55	+0.1
59,003	-		GFF4695	0.55	+0.3
59,202	+		GFF4695	0.88	-0.5
59,202	+		GFF4695	0.88	+1.5
59,250	-				+0.0
60,022	+				-0.1
60,114	-				-0.0
60,137	+				-0.3
60,137	+				-0.1
60,137	+				-0.5
60,137	+				-0.5
60,137	+				-0.1
60,138	-				-0.5
60,138	-				+0.7
60,138	-				-1.1
60,138	-				+0.0
60,138	-				-1.5
60,138	-				-0.3
60,138	-				+1.1
60,138	-				+0.7
60,138	-				+0.1
60,138	-				+0.2
60,138	-				+3.1
60,138	-				-0.8
60,142	+				-0.1
60,142	+				+0.6
60,142	+				-0.3
60,142	+				+0.6
60,143	-				+0.3
60,191	+				+0.2
60,191	+				-0.2
60,191	+				+0.5