Strain Fitness in Variovorax sp. SCN45 around GFF4498

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
140,964	+		GFF4496	0.65	-0.1
140,964	+		GFF4496	0.65	-0.3
140,964	+		GFF4496	0.65	+1.0
140,964	+		GFF4496	0.65	+1.8
140,964	+		GFF4496	0.65	-0.5
140,964	+		GFF4496	0.65	-0.4
140,964	+		GFF4496	0.65	-0.4
140,964	+		GFF4496	0.65	-0.9
140,965	-		GFF4496	0.65	-0.8
140,965	-		GFF4496	0.65	-0.2
140,965	-		GFF4496	0.65	-1.2
140,965	-		GFF4496	0.65	-0.3
140,965	-		GFF4496	0.65	+0.9
140,965	-		GFF4496	0.65	-1.1
140,965	-		GFF4496	0.65	+0.1
140,965	-		GFF4496	0.65	+0.2
140,965	-		GFF4496	0.65	+0.1
140,965	-		GFF4496	0.65	+1.4
140,965	-		GFF4496	0.65	-0.7
140,965	-		GFF4496	0.65	-0.0
140,965	-		GFF4496	0.65	-1.2
140,985	+		GFF4496	0.66	-1.2
140,985	+		GFF4496	0.66	-0.4
140,985	+		GFF4496	0.66	-1.0
140,985	+		GFF4496	0.66	-1.2
140,985	+		GFF4496	0.66	+1.0
140,986	-		GFF4496	0.66	+0.5
140,986	-		GFF4496	0.66	-0.8
141,186	+		GFF4496	0.79	+1.2
141,187	+		GFF4496	0.79	-0.4
141,187	-		GFF4496	0.79	+0.6
141,187	-		GFF4496	0.79	-0.1
141,187	-		GFF4496	0.79	+0.9
141,187	-		GFF4496	0.79	-1.4
141,187	-		GFF4496	0.79	-0.4
141,589	+		GFF4497	0.20	-0.4
141,847	+		GFF4497	0.84	-0.1
141,848	-		GFF4497	0.85	-0.5
141,848	-		GFF4497	0.85	-1.4
141,848	-		GFF4497	0.85	-1.8
142,110	+				+0.3
142,111	-				-0.4
142,197	+		GFF4498	0.14	+0.6
142,197	+		GFF4498	0.14	-1.2
142,197	+		GFF4498	0.14	-0.6
142,197	+		GFF4498	0.14	-0.6
142,198	-		GFF4498	0.14	-0.0
142,473	+		GFF4498	0.28	+0.5
142,473	+		GFF4498	0.28	-1.5
142,474	-		GFF4498	0.28	-0.9
142,474	-		GFF4498	0.28	-0.4
142,474	-		GFF4498	0.28	-0.3
142,474	-		GFF4498	0.28	+0.5
142,474	-		GFF4498	0.28	+1.6
142,474	-		GFF4498	0.28	-0.4
142,474	-		GFF4498	0.28	+2.2
142,573	-		GFF4498	0.33	+0.8
142,588	-		GFF4498	0.34	-0.0
142,588	-		GFF4498	0.34	+0.5
142,588	-		GFF4498	0.34	-0.2
142,599	+		GFF4498	0.34	+0.2
142,599	+		GFF4498	0.34	-0.3
142,667	-		GFF4498	0.38	+0.3
142,715	-		GFF4498	0.40	+0.6
142,715	-		GFF4498	0.40	+0.2
142,715	-		GFF4498	0.40	+1.6
142,715	-		GFF4498	0.40	-0.4
142,715	-		GFF4498	0.40	+0.5
142,767	+		GFF4498	0.43	-0.9
142,767	+		GFF4498	0.43	+0.8
142,767	+		GFF4498	0.43	+0.5
142,767	+		GFF4498	0.43	-0.4
142,767	+		GFF4498	0.43	+0.3
142,768	-		GFF4498	0.43	+0.4
142,768	-		GFF4498	0.43	-0.1
142,768	-		GFF4498	0.43	+0.7
142,933	-		GFF4498	0.51	-0.1
142,933	-		GFF4498	0.51	+1.2
142,933	-		GFF4498	0.51	+0.5
142,950	+		GFF4498	0.52	+1.0
142,950	+		GFF4498	0.52	-0.0
142,950	+		GFF4498	0.52	-0.5
142,951	-		GFF4498	0.52	-1.0
142,951	-		GFF4498	0.52	-1.4
142,951	-		GFF4498	0.52	-0.3
142,951	-		GFF4498	0.52	-0.5
142,951	-		GFF4498	0.52	-1.0
142,951	-		GFF4498	0.52	-0.7
142,951	-		GFF4498	0.52	-0.4
143,019	+		GFF4498	0.55	-1.8
143,019	+		GFF4498	0.55	-2.4
143,019	+		GFF4498	0.55	+0.6
143,019	+		GFF4498	0.55	-0.9
143,019	+		GFF4498	0.55	+0.1
143,019	+		GFF4498	0.55	+0.2
143,019	+		GFF4498	0.55	-1.2
143,019	+		GFF4498	0.55	-0.1
143,019	+		GFF4498	0.55	+0.3
143,020	-		GFF4498	0.55	+1.7
143,020	-		GFF4498	0.55	+0.0
143,020	-		GFF4498	0.55	-0.1
143,020	-		GFF4498	0.55	-0.7
143,020	-		GFF4498	0.55	-0.9
143,020	-		GFF4498	0.55	-0.2
143,020	-		GFF4498	0.55	+1.1
143,020	-		GFF4498	0.55	+0.4
143,020	-		GFF4498	0.55	-0.7
143,073	+		GFF4498	0.58	+0.4
143,073	+		GFF4498	0.58	-0.5
143,074	-		GFF4498	0.58	-0.3
143,074	-		GFF4498	0.58	-1.1
143,175	+		GFF4498	0.63	-0.3
143,175	+		GFF4498	0.63	+0.4
143,215	-		GFF4498	0.65	-2.0
143,215	-		GFF4498	0.65	+0.7
143,316	+		GFF4498	0.70	+0.3
143,316	+		GFF4498	0.70	-1.0
143,317	-		GFF4498	0.70	+0.5
143,317	-		GFF4498	0.70	-1.5
143,361	+		GFF4498	0.72	+0.3
143,361	+		GFF4498	0.72	+0.6
143,361	+		GFF4498	0.72	+0.4
143,362	-		GFF4498	0.72	-0.5
143,362	-		GFF4498	0.72	-0.6
143,362	-		GFF4498	0.72	-0.5
143,362	-		GFF4498	0.72	-0.1
144,149	+		GFF4499	0.82	+0.3
144,149	+		GFF4499	0.82	-0.8
144,149	+		GFF4499	0.82	-0.8
144,149	+		GFF4499	0.82	-0.4
144,149	+		GFF4499	0.82	-0.0
144,149	+		GFF4499	0.82	-0.5
144,149	+		GFF4499	0.82	-0.1
144,150	-		GFF4499	0.82	-0.5
144,150	-		GFF4499	0.82	+0.2
144,150	-		GFF4499	0.82	-1.7
144,150	-		GFF4499	0.82	+0.3
144,150	-		GFF4499	0.82	-1.2
144,150	-		GFF4499	0.82	+0.8
144,191	+				-1.0
144,191	+				-0.1
144,191	+				-0.2
144,191	+				-0.3
144,191	+				+0.3
144,191	+				-0.9
144,191	+				-0.4
144,191	+				+0.8
144,191	+				-1.4
144,192	-				-0.6
144,192	-				-0.0
144,192	-				-0.5
144,192	-				-0.3
144,192	-				+0.4
144,192	-				-1.2
144,192	-				+0.9
144,192	-				-0.9
144,192	-				+0.8
144,192	-				+0.2
144,253	+				+0.8
144,253	+				-3.1
144,253	+				-0.8
144,253	+				-0.6
144,253	+				+0.3
144,254	-				+1.8
144,254	-				+0.1
144,254	-				+0.3
144,254	-				+0.1
144,271	+				+0.3
144,272	-				-2.5
144,313	+		GFF4500	0.14	-1.5
144,313	+		GFF4500	0.14	+1.4
144,314	-		GFF4500	0.15	-0.7
144,314	-		GFF4500	0.15	+0.4
144,314	-		GFF4500	0.15	+0.3
144,314	-		GFF4500	0.15	-0.2
144,355	+		GFF4500	0.21	-0.8
144,355	+		GFF4500	0.21	+0.4
144,355	+		GFF4500	0.21	+1.1
144,355	+		GFF4500	0.21	-0.5
144,356	-		GFF4500	0.21	-0.6
144,356	-		GFF4500	0.21	-0.2
144,356	-		GFF4500	0.21	-0.7
144,457	+		GFF4500	0.36	+0.6
144,457	+		GFF4500	0.36	+1.8
144,457	+		GFF4500	0.36	-0.9
144,457	+		GFF4500	0.36	-0.4
144,457	+		GFF4500	0.36	-0.8
144,457	+		GFF4500	0.36	-0.3
144,458	-		GFF4500	0.37	-0.9
144,458	-		GFF4500	0.37	-0.5
144,458	-		GFF4500	0.37	-0.2
144,458	-		GFF4500	0.37	-0.4
144,458	-		GFF4500	0.37	+0.1
144,458	-		GFF4500	0.37	+0.2
144,458	-		GFF4500	0.37	-0.5
144,458	-		GFF4500	0.37	-0.2
144,458	-		GFF4500	0.37	-0.3
144,458	-		GFF4500	0.37	+0.1
144,458	-		GFF4500	0.37	-0.7
144,458	-		GFF4500	0.37	-0.5
144,458	-		GFF4500	0.37	+0.7
144,458	-		GFF4500	0.37	-1.0
144,458	-		GFF4500	0.37	+1.6