Strain Fitness in Variovorax sp. SCN45 around GFF4250

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4249 and GFF4250 are separated by 59 nucleotidesGFF4250 and GFF4251 are separated by 102 nucleotidesGFF4251 and GFF4252 are separated by 81 nucleotides GFF4249 - hypothetical protein, at 164,095 to 165,507 GFF4249 GFF4250 - Transcriptional regulator, AcrR family, at 165,567 to 166,118 GFF4250 GFF4251 - no description, at 166,221 to 166,895 GFF4251 GFF4252 - hypothetical protein, at 166,977 to 168,728 GFF4252 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.813 kb on - strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.954 kb on - strand, within GFF4249at 164.976 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.003 kb on + strand, within GFF4249at 165.004 kb on - strand, within GFF4249at 165.004 kb on - strand, within GFF4249at 165.091 kb on + strand, within GFF4249at 165.091 kb on + strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.092 kb on - strand, within GFF4249at 165.127 kb on + strand, within GFF4249at 165.128 kb on - strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.235 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.237 kb on + strand, within GFF4249at 165.238 kb on - strand, within GFF4249at 165.248 kb on - strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.330 kb on + strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.331 kb on - strand, within GFF4249at 165.382 kb on + strandat 165.382 kb on + strandat 165.382 kb on + strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.383 kb on - strandat 165.419 kb on - strandat 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.994 kb on + strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 165.995 kb on - strand, within GFF4250at 166.238 kb on + strandat 166.238 kb on + strandat 166.238 kb on + strandat 166.239 kb on - strandat 166.239 kb on - strandat 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.437 kb on + strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.438 kb on - strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.620 kb on + strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.621 kb on - strand, within GFF4251at 166.773 kb on + strand, within GFF4251at 166.774 kb on - strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.785 kb on + strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.786 kb on - strand, within GFF4251at 166.893 kb on + strandat 166.893 kb on + strandat 166.894 kb on - strandat 167.044 kb on + strandat 167.044 kb on + strandat 167.045 kb on - strandat 167.045 kb on - strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.101 kb on + strandat 167.102 kb on - strandat 167.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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164,668 + GFF4249 0.41 -0.1
164,668 + GFF4249 0.41 -0.1
164,668 + GFF4249 0.41 +0.4
164,668 + GFF4249 0.41 -1.4
164,669 - GFF4249 0.41 +0.2
164,669 - GFF4249 0.41 +0.1
164,669 - GFF4249 0.41 -0.7
164,813 - GFF4249 0.51 -0.4
164,851 + GFF4249 0.54 -0.2
164,851 + GFF4249 0.54 -0.6
164,851 + GFF4249 0.54 +0.4
164,851 + GFF4249 0.54 +0.2
164,852 - GFF4249 0.54 +0.3
164,852 - GFF4249 0.54 -1.2
164,852 - GFF4249 0.54 +0.5
164,852 - GFF4249 0.54 -1.9
164,954 - GFF4249 0.61 +0.6
164,976 + GFF4249 0.62 -1.3
165,003 + GFF4249 0.64 -2.0
165,003 + GFF4249 0.64 -0.8
165,003 + GFF4249 0.64 -2.0
165,004 - GFF4249 0.64 +0.0
165,004 - GFF4249 0.64 +1.8
165,091 + GFF4249 0.70 -0.4
165,091 + GFF4249 0.70 +0.2
165,092 - GFF4249 0.71 +0.1
165,092 - GFF4249 0.71 +0.9
165,092 - GFF4249 0.71 -0.2
165,127 + GFF4249 0.73 +0.4
165,128 - GFF4249 0.73 -0.7
165,235 + GFF4249 0.81 -1.9
165,235 + GFF4249 0.81 -0.6
165,235 + GFF4249 0.81 +1.8
165,235 + GFF4249 0.81 +2.2
165,237 + GFF4249 0.81 +1.4
165,237 + GFF4249 0.81 +0.4
165,238 - GFF4249 0.81 -0.4
165,248 - GFF4249 0.82 -0.5
165,330 + GFF4249 0.87 +0.7
165,330 + GFF4249 0.87 +0.2
165,331 - GFF4249 0.87 +0.1
165,331 - GFF4249 0.87 -0.0
165,331 - GFF4249 0.87 -1.3
165,331 - GFF4249 0.87 -0.5
165,382 + -1.1
165,382 + +0.9
165,382 + +0.8
165,383 - -0.1
165,383 - -3.0
165,383 - +0.0
165,419 - -0.9
165,994 + GFF4250 0.77 -0.6
165,994 + GFF4250 0.77 -0.7
165,994 + GFF4250 0.77 +0.1
165,994 + GFF4250 0.77 -0.7
165,994 + GFF4250 0.77 -0.9
165,994 + GFF4250 0.77 -1.2
165,995 - GFF4250 0.78 -1.4
165,995 - GFF4250 0.78 -1.7
165,995 - GFF4250 0.78 -0.5
166,238 + +0.2
166,238 + -0.8
166,238 + +0.8
166,239 - -0.6
166,239 - +0.5
166,437 + GFF4251 0.32 -0.2
166,437 + GFF4251 0.32 -0.1
166,437 + GFF4251 0.32 +1.2
166,437 + GFF4251 0.32 -0.5
166,438 - GFF4251 0.32 -0.7
166,438 - GFF4251 0.32 +0.8
166,438 - GFF4251 0.32 -2.2
166,438 - GFF4251 0.32 +0.8
166,438 - GFF4251 0.32 -1.5
166,438 - GFF4251 0.32 +0.6
166,438 - GFF4251 0.32 +0.6
166,620 + GFF4251 0.59 +0.5
166,620 + GFF4251 0.59 +0.1
166,621 - GFF4251 0.59 +0.8
166,621 - GFF4251 0.59 +0.2
166,773 + GFF4251 0.82 -0.9
166,774 - GFF4251 0.82 -0.9
166,785 + GFF4251 0.84 -2.1
166,785 + GFF4251 0.84 -1.0
166,785 + GFF4251 0.84 +0.5
166,785 + GFF4251 0.84 -0.0
166,785 + GFF4251 0.84 -1.6
166,786 - GFF4251 0.84 -0.3
166,786 - GFF4251 0.84 -0.8
166,893 + -0.0
166,893 + +0.2
166,894 - +0.8
167,044 + +0.0
167,044 + -0.0
167,045 - +0.8
167,045 - -1.6
167,101 + -0.1
167,101 + -0.8
167,101 + -0.4
167,102 - -0.5
167,102 - +0.1

Or see this region's nucleotide sequence