Strain Fitness in Variovorax sp. SCN45 around GFF3875

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3873 and GFF3874 are separated by 13 nucleotidesGFF3874 and GFF3875 overlap by 4 nucleotidesGFF3875 and GFF3876 are separated by 17 nucleotidesGFF3876 and GFF3877 overlap by 1 nucleotides GFF3873 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 71,073 to 71,834 GFF3873 GFF3874 - Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7), at 71,848 to 72,240 GFF3874 GFF3875 - beta-N-acetylglucosaminidase (EC 3.2.1.52), at 72,237 to 73,319 GFF3875 GFF3876 - UTP pyrophosphatase (EC 3.6.1.9), at 73,337 to 73,852 GFF3876 GFF3877 - Uncharacterized chaperone protein YegD, at 73,852 to 75,132 GFF3877 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2at 71.854 kb on + strandat 71.854 kb on + strandat 71.854 kb on + strandat 71.855 kb on - strandat 71.856 kb on - strandat 72.004 kb on + strand, within GFF3874at 72.004 kb on + strand, within GFF3874at 72.005 kb on - strand, within GFF3874at 72.005 kb on - strand, within GFF3874at 72.205 kb on + strandat 72.235 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.236 kb on + strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.861 kb on + strand, within GFF3875at 72.861 kb on + strand, within GFF3875at 72.861 kb on + strand, within GFF3875at 72.862 kb on - strand, within GFF3875at 72.912 kb on + strand, within GFF3875at 72.913 kb on - strand, within GFF3875at 73.035 kb on + strand, within GFF3875at 73.036 kb on - strand, within GFF3875at 73.036 kb on - strand, within GFF3875at 73.036 kb on - strand, within GFF3875at 73.036 kb on - strand, within GFF3875at 73.036 kb on - strand, within GFF3875at 73.059 kb on + strand, within GFF3875at 73.059 kb on + strand, within GFF3875at 73.060 kb on - strand, within GFF3875at 73.284 kb on + strandat 73.284 kb on + strandat 73.285 kb on - strandat 73.392 kb on + strand, within GFF3876at 73.392 kb on + strand, within GFF3876at 73.392 kb on + strand, within GFF3876at 73.392 kb on + strand, within GFF3876at 73.393 kb on - strand, within GFF3876at 73.393 kb on - strand, within GFF3876at 73.393 kb on - strand, within GFF3876at 73.422 kb on + strand, within GFF3876at 73.422 kb on + strand, within GFF3876at 73.423 kb on - strand, within GFF3876at 73.423 kb on - strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.452 kb on + strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.453 kb on - strand, within GFF3876at 73.529 kb on + strand, within GFF3876at 73.529 kb on + strand, within GFF3876at 73.529 kb on + strand, within GFF3876at 73.529 kb on + strand, within GFF3876at 73.529 kb on + strand, within GFF3876at 73.530 kb on - strand, within GFF3876at 73.530 kb on - strand, within GFF3876at 73.530 kb on - strand, within GFF3876at 73.631 kb on + strand, within GFF3876at 73.632 kb on - strand, within GFF3876at 73.632 kb on - strand, within GFF3876at 73.632 kb on - strand, within GFF3876at 73.632 kb on - strand, within GFF3876at 73.655 kb on + strand, within GFF3876at 73.655 kb on + strand, within GFF3876at 73.656 kb on - strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.710 kb on + strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.711 kb on - strand, within GFF3876at 73.716 kb on + strand, within GFF3876at 73.716 kb on + strand, within GFF3876at 73.716 kb on + strand, within GFF3876at 73.716 kb on + strand, within GFF3876at 73.716 kb on + strand, within GFF3876at 73.717 kb on - strand, within GFF3876at 73.717 kb on - strand, within GFF3876at 73.717 kb on - strand, within GFF3876at 73.717 kb on - strand, within GFF3876at 73.717 kb on - strand, within GFF3876at 73.845 kb on + strandat 73.845 kb on + strandat 73.846 kb on - strandat 73.846 kb on - strandat 73.846 kb on - strandat 73.846 kb on - strandat 73.846 kb on - strandat 74.000 kb on + strand, within GFF3877at 74.000 kb on + strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.001 kb on - strand, within GFF3877at 74.276 kb on + strand, within GFF3877at 74.276 kb on + strand, within GFF3877at 74.277 kb on - strand, within GFF3877at 74.277 kb on - strand, within GFF3877at 74.277 kb on - strand, within GFF3877

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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71,854 + -0.5
71,854 + -0.4
71,854 + -0.4
71,855 - -0.1
71,856 - -0.7
72,004 + GFF3874 0.40 +0.4
72,004 + GFF3874 0.40 +0.1
72,005 - GFF3874 0.40 -1.9
72,005 - GFF3874 0.40 +0.8
72,205 + +0.9
72,235 + -0.9
72,236 + +0.8
72,236 + -0.1
72,236 + -1.9
72,236 + +0.1
72,236 + -1.7
72,236 + +0.0
72,236 + -0.0
72,237 - +0.5
72,237 - -0.5
72,237 - +0.9
72,237 - -0.8
72,237 - +0.2
72,237 - -0.2
72,237 - -1.1
72,237 - +0.1
72,237 - -0.5
72,237 - -0.9
72,237 - -0.3
72,237 - -0.1
72,237 - -2.2
72,861 + GFF3875 0.58 -0.4
72,861 + GFF3875 0.58 +0.5
72,861 + GFF3875 0.58 -2.4
72,862 - GFF3875 0.58 -0.8
72,912 + GFF3875 0.62 -0.0
72,913 - GFF3875 0.62 -0.7
73,035 + GFF3875 0.74 -1.2
73,036 - GFF3875 0.74 +0.3
73,036 - GFF3875 0.74 -0.8
73,036 - GFF3875 0.74 +0.3
73,036 - GFF3875 0.74 -1.2
73,036 - GFF3875 0.74 -0.7
73,059 + GFF3875 0.76 +0.7
73,059 + GFF3875 0.76 -0.9
73,060 - GFF3875 0.76 -1.6
73,284 + +0.1
73,284 + -0.7
73,285 - +0.3
73,392 + GFF3876 0.11 +0.2
73,392 + GFF3876 0.11 -1.4
73,392 + GFF3876 0.11 -0.0
73,392 + GFF3876 0.11 -0.9
73,393 - GFF3876 0.11 -0.8
73,393 - GFF3876 0.11 +0.3
73,393 - GFF3876 0.11 -1.0
73,422 + GFF3876 0.16 +1.1
73,422 + GFF3876 0.16 -0.4
73,423 - GFF3876 0.17 -0.7
73,423 - GFF3876 0.17 +0.2
73,452 + GFF3876 0.22 +0.4
73,452 + GFF3876 0.22 +0.6
73,452 + GFF3876 0.22 -0.2
73,452 + GFF3876 0.22 -0.9
73,452 + GFF3876 0.22 +2.0
73,452 + GFF3876 0.22 -1.6
73,452 + GFF3876 0.22 -0.3
73,452 + GFF3876 0.22 +0.1
73,452 + GFF3876 0.22 +0.2
73,452 + GFF3876 0.22 -0.3
73,452 + GFF3876 0.22 +0.1
73,453 - GFF3876 0.22 -0.3
73,453 - GFF3876 0.22 -0.7
73,453 - GFF3876 0.22 +0.7
73,453 - GFF3876 0.22 +0.7
73,453 - GFF3876 0.22 +1.5
73,453 - GFF3876 0.22 +1.4
73,453 - GFF3876 0.22 -1.7
73,453 - GFF3876 0.22 -0.9
73,453 - GFF3876 0.22 -2.6
73,453 - GFF3876 0.22 +0.2
73,453 - GFF3876 0.22 +0.5
73,453 - GFF3876 0.22 +0.2
73,529 + GFF3876 0.37 +1.0
73,529 + GFF3876 0.37 +1.2
73,529 + GFF3876 0.37 -0.9
73,529 + GFF3876 0.37 +0.4
73,529 + GFF3876 0.37 -0.1
73,530 - GFF3876 0.37 +1.4
73,530 - GFF3876 0.37 +0.1
73,530 - GFF3876 0.37 -0.0
73,631 + GFF3876 0.57 -0.3
73,632 - GFF3876 0.57 +1.2
73,632 - GFF3876 0.57 -1.8
73,632 - GFF3876 0.57 +0.1
73,632 - GFF3876 0.57 -2.5
73,655 + GFF3876 0.62 -1.9
73,655 + GFF3876 0.62 -0.5
73,656 - GFF3876 0.62 +0.2
73,710 + GFF3876 0.72 +0.4
73,710 + GFF3876 0.72 -1.1
73,710 + GFF3876 0.72 +1.4
73,710 + GFF3876 0.72 +0.1
73,710 + GFF3876 0.72 +0.7
73,710 + GFF3876 0.72 -0.4
73,710 + GFF3876 0.72 +1.0
73,710 + GFF3876 0.72 -0.9
73,710 + GFF3876 0.72 -0.4
73,710 + GFF3876 0.72 +0.4
73,711 - GFF3876 0.72 +0.4
73,711 - GFF3876 0.72 +0.7
73,711 - GFF3876 0.72 -1.3
73,711 - GFF3876 0.72 -1.2
73,711 - GFF3876 0.72 -0.1
73,711 - GFF3876 0.72 +0.3
73,711 - GFF3876 0.72 +0.4
73,711 - GFF3876 0.72 +0.3
73,711 - GFF3876 0.72 -0.3
73,711 - GFF3876 0.72 +1.1
73,716 + GFF3876 0.73 +0.1
73,716 + GFF3876 0.73 -0.6
73,716 + GFF3876 0.73 +0.3
73,716 + GFF3876 0.73 -0.7
73,716 + GFF3876 0.73 +0.2
73,717 - GFF3876 0.74 -0.4
73,717 - GFF3876 0.74 -0.3
73,717 - GFF3876 0.74 -0.6
73,717 - GFF3876 0.74 +0.1
73,717 - GFF3876 0.74 -1.8
73,845 + +0.3
73,845 + -1.4
73,846 - -0.7
73,846 - +0.5
73,846 - +0.6
73,846 - +0.1
73,846 - +0.5
74,000 + GFF3877 0.12 +0.1
74,000 + GFF3877 0.12 -2.1
74,001 - GFF3877 0.12 -0.5
74,001 - GFF3877 0.12 -0.1
74,001 - GFF3877 0.12 +0.5
74,001 - GFF3877 0.12 -0.7
74,001 - GFF3877 0.12 +0.9
74,001 - GFF3877 0.12 -0.9
74,276 + GFF3877 0.33 +0.1
74,276 + GFF3877 0.33 +0.5
74,277 - GFF3877 0.33 -0.5
74,277 - GFF3877 0.33 -1.5
74,277 - GFF3877 0.33 +0.8

Or see this region's nucleotide sequence