Strain Fitness in Variovorax sp. SCN45 around GFF3861

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3859 and GFF3860 are separated by 99 nucleotidesGFF3860 and GFF3861 are separated by 99 nucleotidesGFF3861 and GFF3862 are separated by 13 nucleotidesGFF3862 and GFF3863 are separated by 10 nucleotides GFF3859 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG, at 57,770 to 58,513 GFF3859 GFF3860 - Acyl carrier protein, at 58,613 to 58,852 GFF3860 GFF3861 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 58,952 to 60,196 GFF3861 GFF3862 - hypothetical protein, at 60,210 to 60,692 GFF3862 GFF3863 - RNA polymerase sigma factor RpoE, at 60,703 to 61,380 GFF3863 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.511 kb on + strandat 58.893 kb on + strandat 60.234 kb on + strandat 60.234 kb on + strandat 60.234 kb on + strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.235 kb on - strandat 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.318 kb on + strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.319 kb on - strand, within GFF3862at 60.330 kb on - strand, within GFF3862at 60.430 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.619 kb on + strand, within GFF3862at 60.620 kb on - strand, within GFF3862at 60.620 kb on - strand, within GFF3862at 60.620 kb on - strand, within GFF3862at 60.620 kb on - strand, within GFF3862at 60.620 kb on - strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.621 kb on + strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.622 kb on - strand, within GFF3862at 60.709 kb on + strandat 60.853 kb on + strand, within GFF3863at 60.853 kb on + strand, within GFF3863at 60.853 kb on + strand, within GFF3863at 60.853 kb on + strand, within GFF3863at 60.853 kb on + strand, within GFF3863at 60.853 kb on + strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.854 kb on - strand, within GFF3863at 60.916 kb on - strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.982 kb on + strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.983 kb on - strand, within GFF3863at 60.995 kb on - strand, within GFF3863at 61.102 kb on + strand, within GFF3863at 61.102 kb on + strand, within GFF3863at 61.102 kb on + strand, within GFF3863at 61.103 kb on - strand, within GFF3863at 61.103 kb on - strand, within GFF3863

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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58,511 + +0.2
58,511 + +1.9
58,511 + -0.2
58,511 + -0.8
58,511 + +1.2
58,511 + -0.3
58,511 + -0.0
58,511 + +1.5
58,511 + +0.7
58,511 + -1.2
58,511 + -0.7
58,511 + -0.4
58,893 + -0.9
60,234 + +0.1
60,234 + -0.3
60,234 + -2.2
60,235 - -0.6
60,235 - +0.5
60,235 - -1.3
60,235 - +0.9
60,235 - +1.7
60,235 - -0.2
60,235 - -0.7
60,318 + GFF3862 0.22 -0.5
60,318 + GFF3862 0.22 -0.3
60,318 + GFF3862 0.22 +0.7
60,318 + GFF3862 0.22 -0.1
60,318 + GFF3862 0.22 -0.1
60,318 + GFF3862 0.22 -1.0
60,318 + GFF3862 0.22 +0.8
60,318 + GFF3862 0.22 +0.7
60,319 - GFF3862 0.23 -0.2
60,319 - GFF3862 0.23 -1.1
60,319 - GFF3862 0.23 -0.5
60,319 - GFF3862 0.23 +0.3
60,319 - GFF3862 0.23 -1.1
60,319 - GFF3862 0.23 -0.7
60,319 - GFF3862 0.23 +1.9
60,330 - GFF3862 0.25 +0.5
60,430 + GFF3862 0.46 +0.1
60,619 + GFF3862 0.85 -0.3
60,619 + GFF3862 0.85 -0.1
60,619 + GFF3862 0.85 -0.5
60,619 + GFF3862 0.85 -0.9
60,619 + GFF3862 0.85 -0.4
60,619 + GFF3862 0.85 +0.2
60,619 + GFF3862 0.85 +0.0
60,619 + GFF3862 0.85 +1.7
60,619 + GFF3862 0.85 -0.5
60,620 - GFF3862 0.85 -1.1
60,620 - GFF3862 0.85 -0.2
60,620 - GFF3862 0.85 -0.3
60,620 - GFF3862 0.85 +1.7
60,620 - GFF3862 0.85 +1.4
60,621 + GFF3862 0.85 -0.1
60,621 + GFF3862 0.85 -0.3
60,621 + GFF3862 0.85 -1.7
60,621 + GFF3862 0.85 +0.2
60,621 + GFF3862 0.85 +0.8
60,621 + GFF3862 0.85 +0.2
60,622 - GFF3862 0.85 -1.4
60,622 - GFF3862 0.85 -1.8
60,622 - GFF3862 0.85 -1.0
60,622 - GFF3862 0.85 +0.0
60,622 - GFF3862 0.85 -0.0
60,622 - GFF3862 0.85 +0.7
60,622 - GFF3862 0.85 +0.1
60,622 - GFF3862 0.85 -1.9
60,622 - GFF3862 0.85 -0.8
60,622 - GFF3862 0.85 -1.2
60,622 - GFF3862 0.85 -0.5
60,622 - GFF3862 0.85 -0.4
60,622 - GFF3862 0.85 -1.1
60,622 - GFF3862 0.85 +1.8
60,622 - GFF3862 0.85 -1.6
60,622 - GFF3862 0.85 -0.9
60,622 - GFF3862 0.85 +0.6
60,622 - GFF3862 0.85 -0.2
60,622 - GFF3862 0.85 +0.0
60,622 - GFF3862 0.85 -1.3
60,622 - GFF3862 0.85 +1.5
60,622 - GFF3862 0.85 +0.7
60,709 + -0.3
60,853 + GFF3863 0.22 +0.5
60,853 + GFF3863 0.22 +0.4
60,853 + GFF3863 0.22 +0.5
60,853 + GFF3863 0.22 +0.0
60,853 + GFF3863 0.22 -2.2
60,853 + GFF3863 0.22 +0.1
60,854 - GFF3863 0.22 +0.1
60,854 - GFF3863 0.22 +0.1
60,854 - GFF3863 0.22 -2.5
60,854 - GFF3863 0.22 -1.1
60,854 - GFF3863 0.22 -0.7
60,854 - GFF3863 0.22 -0.5
60,854 - GFF3863 0.22 +0.7
60,854 - GFF3863 0.22 -0.4
60,916 - GFF3863 0.31 -0.0
60,982 + GFF3863 0.41 +0.7
60,982 + GFF3863 0.41 -0.2
60,982 + GFF3863 0.41 -0.7
60,982 + GFF3863 0.41 -0.9
60,982 + GFF3863 0.41 -1.5
60,982 + GFF3863 0.41 -1.7
60,982 + GFF3863 0.41 -0.2
60,982 + GFF3863 0.41 -1.7
60,982 + GFF3863 0.41 -0.3
60,982 + GFF3863 0.41 -0.0
60,982 + GFF3863 0.41 -0.3
60,982 + GFF3863 0.41 +0.0
60,982 + GFF3863 0.41 -0.7
60,982 + GFF3863 0.41 -1.8
60,983 - GFF3863 0.41 -0.5
60,983 - GFF3863 0.41 -0.2
60,983 - GFF3863 0.41 -0.2
60,983 - GFF3863 0.41 -1.0
60,983 - GFF3863 0.41 -0.1
60,983 - GFF3863 0.41 +0.0
60,983 - GFF3863 0.41 -0.6
60,983 - GFF3863 0.41 -1.5
60,983 - GFF3863 0.41 -0.3
60,983 - GFF3863 0.41 +0.7
60,983 - GFF3863 0.41 -2.0
60,983 - GFF3863 0.41 -1.5
60,983 - GFF3863 0.41 +0.8
60,995 - GFF3863 0.43 -0.2
61,102 + GFF3863 0.59 -0.1
61,102 + GFF3863 0.59 -0.1
61,102 + GFF3863 0.59 +0.1
61,103 - GFF3863 0.59 -0.3
61,103 - GFF3863 0.59 +0.5

Or see this region's nucleotide sequence