Strain Fitness in Variovorax sp. SCN45 around GFF3285

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
110,364	+		GFF3284	0.72	-1.4
110,364	+		GFF3284	0.72	-0.7
110,364	+		GFF3284	0.72	-0.4
110,364	+		GFF3284	0.72	-1.0
110,364	+		GFF3284	0.72	-1.5
110,418	+		GFF3284	0.74	-0.5
110,895	+		GFF3284	0.88	-0.3
110,895	+		GFF3284	0.88	+0.2
110,895	+		GFF3284	0.88	-1.4
110,895	+		GFF3284	0.88	-1.2
110,895	+		GFF3284	0.88	-0.1
110,896	-		GFF3284	0.88	-1.0
110,896	-		GFF3284	0.88	-0.1
110,896	-		GFF3284	0.88	-0.3
110,896	-		GFF3284	0.88	-0.8
111,018	+				-1.2
111,018	+				-1.2
111,018	+				+0.2
111,018	+				-2.9
111,019	-				+0.4
111,019	-				+0.1
111,019	-				+0.2
111,383	+				-0.0
111,383	+				-0.3
111,383	+				+1.7
111,383	+				+0.3
111,383	+				-0.3
111,383	+				-0.6
111,383	+				-0.6
111,383	+				+0.7
111,383	+				+0.4
111,383	+				-0.3
111,383	+				-0.1
111,384	-				-0.7
111,384	-				+0.1
111,384	-				-0.3
111,384	-				-1.0
111,454	+				-0.6
111,454	+				-0.6
111,454	+				-0.2
111,454	+				-0.1
111,454	+				-0.5
111,454	+				-0.2
111,455	-				-0.2
111,455	-				-0.1
111,455	-				-0.6
111,455	-				-0.2
111,455	-				-0.2
111,608	-		GFF3285	0.16	+0.5
111,619	+		GFF3285	0.16	-0.3
111,619	+		GFF3285	0.16	-1.2
111,619	+		GFF3285	0.16	-0.3
111,619	+		GFF3285	0.16	+1.6
111,619	+		GFF3285	0.16	+0.3
111,619	+		GFF3285	0.16	-0.9
111,619	+		GFF3285	0.16	-1.1
111,619	+		GFF3285	0.16	-0.9
111,619	+		GFF3285	0.16	-0.5
111,620	-		GFF3285	0.16	+0.6
111,620	-		GFF3285	0.16	-0.5
111,620	-		GFF3285	0.16	+0.6
111,620	-		GFF3285	0.16	-0.0
111,620	-		GFF3285	0.16	-0.4
111,620	-		GFF3285	0.16	+0.4
111,620	-		GFF3285	0.16	-1.1
111,646	+		GFF3285	0.18	+0.8
111,646	+		GFF3285	0.18	-1.4
111,646	+		GFF3285	0.18	-0.5
111,646	+		GFF3285	0.18	+1.3
111,646	+		GFF3285	0.18	+0.5
111,646	+		GFF3285	0.18	+0.2
111,646	+		GFF3285	0.18	+0.2
111,646	+		GFF3285	0.18	+1.5
111,646	+		GFF3285	0.18	+0.2
111,647	-		GFF3285	0.18	-0.6
111,647	-		GFF3285	0.18	-0.3
111,647	-		GFF3285	0.18	-1.9
111,647	-		GFF3285	0.18	-0.5
111,647	-		GFF3285	0.18	-0.9
111,647	-		GFF3285	0.18	+0.0
111,647	-		GFF3285	0.18	+0.1
111,647	-		GFF3285	0.18	-0.6
111,647	-		GFF3285	0.18	-0.9
111,647	-		GFF3285	0.18	+2.1
111,647	-		GFF3285	0.18	+0.3
111,647	-		GFF3285	0.18	-0.1
111,647	-		GFF3285	0.18	-0.3
111,649	+		GFF3285	0.18	-0.1
111,649	+		GFF3285	0.18	-0.7
111,650	-		GFF3285	0.18	-0.5
111,650	-		GFF3285	0.18	+0.3
111,652	+		GFF3285	0.18	-0.6
111,653	-		GFF3285	0.18	-1.4
111,653	-		GFF3285	0.18	-1.0
111,653	-		GFF3285	0.18	+0.1
111,653	-		GFF3285	0.18	-0.6
111,688	+		GFF3285	0.19	+0.5
111,688	+		GFF3285	0.19	-0.0
111,688	+		GFF3285	0.19	-1.1
111,688	+		GFF3285	0.19	-0.1
111,688	+		GFF3285	0.19	-0.1
111,689	-		GFF3285	0.19	+0.0
111,689	-		GFF3285	0.19	-0.6
111,689	-		GFF3285	0.19	-0.5
111,689	-		GFF3285	0.19	-1.1
111,689	-		GFF3285	0.19	+1.6
111,689	-		GFF3285	0.19	-0.4
111,689	-		GFF3285	0.19	-0.5
111,689	-		GFF3285	0.19	+0.0
111,689	-		GFF3285	0.19	-0.7
111,945	-		GFF3285	0.30	-1.0
111,945	-		GFF3285	0.30	+1.5
112,117	+		GFF3285	0.38	-0.5
112,117	+		GFF3285	0.38	-1.4
112,117	+		GFF3285	0.38	-0.9
112,117	+		GFF3285	0.38	+1.7
112,117	+		GFF3285	0.38	+0.3
112,117	+		GFF3285	0.38	+0.4
112,118	-		GFF3285	0.38	+0.0
112,118	-		GFF3285	0.38	-1.0
112,118	-		GFF3285	0.38	-0.4
112,118	-		GFF3285	0.38	-0.6
112,252	+		GFF3285	0.44	-0.9
112,252	+		GFF3285	0.44	-0.6
112,252	+		GFF3285	0.44	-0.4
112,252	+		GFF3285	0.44	-0.0
112,253	-		GFF3285	0.44	-0.1
112,253	-		GFF3285	0.44	-1.4
112,253	-		GFF3285	0.44	-0.4
112,498	+		GFF3285	0.54	-0.7
112,498	+		GFF3285	0.54	-2.2
112,498	+		GFF3285	0.54	+0.1
112,498	+		GFF3285	0.54	+0.9
112,498	+		GFF3285	0.54	-0.3
112,498	+		GFF3285	0.54	-0.9
112,498	+		GFF3285	0.54	+0.7
112,499	-		GFF3285	0.54	+0.9
112,499	-		GFF3285	0.54	-0.2
112,499	-		GFF3285	0.54	-0.3
112,499	-		GFF3285	0.54	-0.8
112,499	-		GFF3285	0.54	-0.7
112,499	-		GFF3285	0.54	-2.6
112,499	-		GFF3285	0.54	+0.7
112,499	-		GFF3285	0.54	-0.4
112,499	-		GFF3285	0.54	-0.2
112,508	-		GFF3285	0.55	-0.5
112,508	-		GFF3285	0.55	+0.3
112,508	-		GFF3285	0.55	-0.4
112,508	-		GFF3285	0.55	+0.9
112,646	+		GFF3285	0.60	-1.8
112,747	+		GFF3285	0.65	-0.3
112,747	+		GFF3285	0.65	-2.8
112,748	-		GFF3285	0.65	-0.0
112,748	-		GFF3285	0.65	+0.3
112,748	-		GFF3285	0.65	-0.4
112,748	-		GFF3285	0.65	-0.5
112,855	+		GFF3285	0.69	-0.5
112,855	+		GFF3285	0.69	+0.1
112,855	+		GFF3285	0.69	-0.2
112,856	-		GFF3285	0.70	-0.1
113,419	+				-0.9
113,419	+				+0.1
113,636	+				-0.1
113,636	+				-0.2
113,637	-				-0.9
113,637	-				+0.4
113,637	-				-0.6
113,656	+		GFF3286	0.22	-0.1
113,765	-				+0.5
113,775	+				-0.2
113,810	-				-0.1
113,816	+				-0.4
113,816	+				-1.4
113,816	+				+0.1
113,816	+				-0.2
113,817	-				-2.6
113,817	-				+0.1
113,817	-				+0.2
113,817	-				-1.2
113,817	-				-0.1
113,817	-				-0.9
113,817	-				+1.1
113,817	-				-1.6
113,818	+				+0.3
113,818	+				-2.1
113,818	+				-0.0
113,818	+				-0.7
113,818	+				-0.4
113,818	+				-0.2
113,818	+				-0.9
113,818	+				-0.1
113,818	+				+0.2
113,818	+				+0.2
113,818	+				-0.2
113,818	+				-0.3
113,819	-				-1.1
113,819	-				-0.2
113,819	-				+0.2
113,819	-				+0.3
113,819	-				-0.4
113,819	-				+0.2
113,819	-				+0.4
113,819	-				-0.1
113,819	-				+0.6
113,819	-				+0.3
113,819	-				+0.4
113,819	-				-0.5
113,819	-				+0.7
113,819	-				+2.7
113,819	-				-0.6
113,819	-				+0.6
113,819	-				-0.1
113,822	+				-1.0
113,822	+				+1.1
113,822	+				-1.9
113,822	+				-0.3
113,823	-				+2.6
113,823	-				-1.3
113,823	-				-0.1
113,823	-				-1.1
113,823	-				-0.4
113,823	-				-2.6
113,823	-				-0.1
113,837	+				-0.8
113,837	+				-0.6
113,838	-				-0.2
113,838	-				+0.4
114,020	+		GFF3287	0.25	+0.8
114,020	+		GFF3287	0.25	-0.7
114,020	+		GFF3287	0.25	-2.1
114,020	+		GFF3287	0.25	+2.5
114,020	+		GFF3287	0.25	-0.1
114,020	+		GFF3287	0.25	-0.2
114,020	+		GFF3287	0.25	-0.7
114,020	+		GFF3287	0.25	+0.8
114,020	+		GFF3287	0.25	-0.0
114,020	+		GFF3287	0.25	-1.1
114,020	+		GFF3287	0.25	-0.5
114,020	+		GFF3287	0.25	-0.1
114,020	+		GFF3287	0.25	-0.6
114,020	+		GFF3287	0.25	-0.9
114,020	+		GFF3287	0.25	-1.7
114,021	-		GFF3287	0.25	-0.8
114,021	-		GFF3287	0.25	-1.5
114,021	-		GFF3287	0.25	-0.3
114,021	-		GFF3287	0.25	+0.9
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	-0.7
114,021	-		GFF3287	0.25	-0.7
114,021	-		GFF3287	0.25	+0.0
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	+1.1
114,021	-		GFF3287	0.25	-1.1
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	-0.5
114,021	-		GFF3287	0.25	-1.4
114,021	-		GFF3287	0.25	-0.9
114,021	-		GFF3287	0.25	+1.9
114,021	-		GFF3287	0.25	-0.2
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	+0.5
114,021	-		GFF3287	0.25	+0.1
114,173	+		GFF3287	0.54	+0.7
114,173	+		GFF3287	0.54	+0.9
114,173	+		GFF3287	0.54	-1.0
114,173	+		GFF3287	0.54	-1.4
114,173	+		GFF3287	0.54	+0.5
114,173	+		GFF3287	0.54	+0.7
114,174	-		GFF3287	0.54	-0.7
114,174	-		GFF3287	0.54	+1.1
114,174	-		GFF3287	0.54	-0.5
114,215	+		GFF3287	0.62	+1.8
114,215	+		GFF3287	0.62	+0.2
114,215	+		GFF3287	0.62	-0.2
114,215	+		GFF3287	0.62	-0.4
114,215	+		GFF3287	0.62	-1.3
114,215	+		GFF3287	0.62	+0.3
114,215	+		GFF3287	0.62	-0.1
114,215	+		GFF3287	0.62	-0.0
114,215	+		GFF3287	0.62	-2.2
114,215	+		GFF3287	0.62	+0.3
114,215	+		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	-0.1
114,216	-		GFF3287	0.62	+0.3
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	-1.1
114,216	-		GFF3287	0.62	+0.2
114,216	-		GFF3287	0.62	-0.6
114,216	-		GFF3287	0.62	+0.2
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	-0.7
114,216	-		GFF3287	0.62	+0.1
114,216	-		GFF3287	0.62	+0.6
114,216	-		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	+0.3
114,245	+		GFF3287	0.68	-0.8
114,245	+		GFF3287	0.68	-1.4
114,245	+		GFF3287	0.68	-0.4
114,245	+		GFF3287	0.68	-0.1
114,245	+		GFF3287	0.68	+0.5
114,246	-		GFF3287	0.68	+1.4
114,246	-		GFF3287	0.68	-0.2
114,246	-		GFF3287	0.68	-0.2
114,246	-		GFF3287	0.68	+0.1
114,460	+				-0.7
114,460	+				-0.0
114,460	+				+1.1
114,461	-				-0.4
114,461	-				+0.3