Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2961 and GFF2962 are separated by 4 nucleotides GFF2962 and GFF2963 overlap by 4 nucleotides
GFF2961 - CzcABC family efflux RND transporter, transmembrane protein, at 389,127 to 392,348
GFF2961
GFF2962 - RND efflux system, membrane fusion protein, at 392,353 to 393,600
GFF2962
GFF2963 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 393,597 to 395,081
GFF2963
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 391.353 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.459 kb on - strand, within GFF2961 at 391.459 kb on - strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.623 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.830 kb on + strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 392.569 kb on + strand, within GFF2962 at 392.569 kb on + strand, within GFF2962 at 392.569 kb on + strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.677 kb on + strand, within GFF2962 at 392.677 kb on + strand, within GFF2962 at 392.678 kb on - strand, within GFF2962 at 392.678 kb on - strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.130 kb on + strand, within GFF2962 at 393.130 kb on + strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.451 kb on + strand, within GFF2962 at 393.451 kb on + strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.675 kb on + strand at 393.676 kb on - strand at 393.676 kb on - strand at 393.972 kb on + strand, within GFF2963 at 393.972 kb on + strand, within GFF2963 at 393.973 kb on - strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.033 kb on - strand, within GFF2963 at 394.155 kb on + strand, within GFF2963 at 394.155 kb on + strand, within GFF2963 at 394.156 kb on - strand, within GFF2963 at 394.462 kb on + strand, within GFF2963 at 394.462 kb on + strand, within GFF2963 at 394.463 kb on - strand, within GFF2963 at 394.463 kb on - strand, within GFF2963 at 394.548 kb on + strand, within GFF2963 at 394.549 kb on - strand, within GFF2963
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL remove 391,353 + GFF2961 0.69 -0.5 391,458 + GFF2961 0.72 -1.8 391,458 + GFF2961 0.72 -0.0 391,458 + GFF2961 0.72 -0.6 391,459 - GFF2961 0.72 -1.6 391,459 - GFF2961 0.72 +0.9 391,485 + GFF2961 0.73 -0.1 391,485 + GFF2961 0.73 +1.7 391,485 + GFF2961 0.73 -0.2 391,485 + GFF2961 0.73 +0.3 391,486 - GFF2961 0.73 +0.7 391,486 - GFF2961 0.73 +0.4 391,486 - GFF2961 0.73 -0.3 391,623 + GFF2961 0.77 -0.2 391,650 + GFF2961 0.78 +0.0 391,650 + GFF2961 0.78 +0.1 391,650 + GFF2961 0.78 +0.1 391,651 - GFF2961 0.78 +1.1 391,651 - GFF2961 0.78 -0.6 391,651 - GFF2961 0.78 -0.4 391,651 - GFF2961 0.78 -0.3 391,651 - GFF2961 0.78 +0.1 391,651 - GFF2961 0.78 +1.0 391,830 + GFF2961 0.84 -0.4 391,831 - GFF2961 0.84 -1.0 391,831 - GFF2961 0.84 +2.4 391,831 - GFF2961 0.84 -0.3 392,569 + GFF2962 0.17 -0.1 392,569 + GFF2962 0.17 -0.5 392,569 + GFF2962 0.17 +0.4 392,570 - GFF2962 0.17 +1.7 392,570 - GFF2962 0.17 -0.1 392,570 - GFF2962 0.17 +1.0 392,570 - GFF2962 0.17 -0.5 392,570 - GFF2962 0.17 -0.8 392,570 - GFF2962 0.17 -0.1 392,677 + GFF2962 0.26 +0.9 392,677 + GFF2962 0.26 -0.4 392,678 - GFF2962 0.26 +1.2 392,678 - GFF2962 0.26 +0.2 393,109 + GFF2962 0.61 -0.3 393,109 + GFF2962 0.61 -0.2 393,109 + GFF2962 0.61 -1.4 393,110 - GFF2962 0.61 -1.9 393,110 - GFF2962 0.61 -0.3 393,110 - GFF2962 0.61 -0.6 393,110 - GFF2962 0.61 -0.2 393,130 + GFF2962 0.62 +0.6 393,130 + GFF2962 0.62 -0.5 393,131 - GFF2962 0.62 -0.3 393,131 - GFF2962 0.62 -1.3 393,131 - GFF2962 0.62 -1.3 393,131 - GFF2962 0.62 -0.2 393,304 + GFF2962 0.76 +0.2 393,304 + GFF2962 0.76 -0.3 393,304 + GFF2962 0.76 +0.1 393,304 + GFF2962 0.76 -1.4 393,304 + GFF2962 0.76 +0.7 393,304 + GFF2962 0.76 +0.1 393,304 + GFF2962 0.76 -0.1 393,304 + GFF2962 0.76 -1.8 393,304 + GFF2962 0.76 +0.3 393,304 + GFF2962 0.76 -0.7 393,304 + GFF2962 0.76 -1.0 393,304 + GFF2962 0.76 -0.2 393,305 - GFF2962 0.76 +0.7 393,305 - GFF2962 0.76 -1.1 393,305 - GFF2962 0.76 -0.2 393,305 - GFF2962 0.76 -1.4 393,305 - GFF2962 0.76 -0.2 393,305 - GFF2962 0.76 -0.3 393,305 - GFF2962 0.76 -0.6 393,305 - GFF2962 0.76 -0.6 393,305 - GFF2962 0.76 -1.9 393,305 - GFF2962 0.76 -1.1 393,451 + GFF2962 0.88 +3.3 393,451 + GFF2962 0.88 -0.6 393,452 - GFF2962 0.88 -0.2 393,452 - GFF2962 0.88 -1.3 393,452 - GFF2962 0.88 -1.4 393,452 - GFF2962 0.88 +0.1 393,452 - GFF2962 0.88 -1.0 393,452 - GFF2962 0.88 -0.9 393,675 + -0.3 393,676 - -0.0 393,676 - +0.6 393,972 + GFF2963 0.25 -1.9 393,972 + GFF2963 0.25 -0.1 393,973 - GFF2963 0.25 -1.6 394,032 + GFF2963 0.29 +0.8 394,032 + GFF2963 0.29 +0.3 394,032 + GFF2963 0.29 +0.7 394,033 - GFF2963 0.29 -0.7 394,155 + GFF2963 0.38 +0.2 394,155 + GFF2963 0.38 -1.1 394,156 - GFF2963 0.38 -2.0 394,462 + GFF2963 0.58 +0.2 394,462 + GFF2963 0.58 -0.3 394,463 - GFF2963 0.58 +0.1 394,463 - GFF2963 0.58 -1.2 394,548 + GFF2963 0.64 -0.5 394,549 - GFF2963 0.64 -0.4
Or see this region's nucleotide sequence