Strain Fitness in Variovorax sp. SCN45 around GFF2059

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
106,418	+		GFF2057	0.83	-0.5
106,418	+		GFF2057	0.83	+0.5
106,418	+		GFF2057	0.83	-0.4
106,418	+		GFF2057	0.83	+1.1
106,418	+		GFF2057	0.83	-1.0
106,419	-		GFF2057	0.83	+0.3
106,419	-		GFF2057	0.83	-0.7
106,419	-		GFF2057	0.83	-0.6
106,419	-		GFF2057	0.83	-0.6
106,419	-		GFF2057	0.83	-0.2
106,419	-		GFF2057	0.83	-0.1
106,437	-		GFF2057	0.85	-0.6
106,437	-		GFF2057	0.85	-0.5
106,568	+				-0.2
106,569	-				+0.4
106,569	-				-0.6
106,614	+				-1.1
106,614	+				-0.2
106,614	+				-2.0
106,614	+				-1.3
106,614	+				+0.4
106,614	+				-0.1
106,614	+				-1.6
106,614	+				+0.1
106,614	+				-1.5
106,614	+				+0.6
106,614	+				-0.3
106,615	-				-0.1
106,615	-				+0.6
106,615	-				+1.0
106,615	-				-0.5
106,615	-				-0.3
106,615	-				-0.3
106,615	-				+0.7
106,615	-				+1.0
106,615	-				+1.0
106,615	-				-0.2
106,615	-				-0.2
106,615	-				+0.6
106,615	-				+0.5
106,641	-				+0.3
106,719	+				-0.2
106,719	+				-0.5
106,719	+				+0.8
106,720	-				-0.7
106,720	-				+0.4
107,032	+		GFF2058	0.51	+0.8
107,032	+		GFF2058	0.51	-0.4
107,032	+		GFF2058	0.51	+0.9
107,032	+		GFF2058	0.51	-0.6
107,032	+		GFF2058	0.51	+0.5
107,032	+		GFF2058	0.51	+0.0
107,033	-		GFF2058	0.52	-0.9
107,038	+		GFF2058	0.52	-0.4
107,038	+		GFF2058	0.52	+0.5
107,038	+		GFF2058	0.52	+0.1
107,038	+		GFF2058	0.52	-0.2
107,038	+		GFF2058	0.52	+0.2
107,038	+		GFF2058	0.52	-0.3
107,038	+		GFF2058	0.52	+0.5
107,038	+		GFF2058	0.52	-0.8
107,038	+		GFF2058	0.52	+1.3
107,038	+		GFF2058	0.52	-0.1
107,039	-		GFF2058	0.52	-0.5
107,039	-		GFF2058	0.52	-0.2
107,039	-		GFF2058	0.52	+1.3
107,039	-		GFF2058	0.52	+0.1
107,039	-		GFF2058	0.52	-0.6
107,039	-		GFF2058	0.52	-0.4
107,039	-		GFF2058	0.52	+2.0
107,039	-		GFF2058	0.52	-0.3
107,039	-		GFF2058	0.52	+0.4
107,039	-		GFF2058	0.52	+0.2
107,643	+		GFF2059	0.21	+1.3
107,643	+		GFF2059	0.21	+1.5
107,644	-		GFF2059	0.21	-1.8
107,644	-		GFF2059	0.21	-0.1
107,644	-		GFF2059	0.21	-0.6
107,644	-		GFF2059	0.21	-0.0
107,644	-		GFF2059	0.21	-0.2
107,644	-		GFF2059	0.21	+0.1
107,644	-		GFF2059	0.21	-0.6
107,644	-		GFF2059	0.21	-0.3
107,644	-		GFF2059	0.21	-0.9
107,766	+		GFF2059	0.30	-0.5
107,766	+		GFF2059	0.30	-0.7
107,766	+		GFF2059	0.30	-1.5
107,766	+		GFF2059	0.30	-0.5
107,766	+		GFF2059	0.30	-0.0
107,766	+		GFF2059	0.30	-0.9
107,766	+		GFF2059	0.30	-0.9
107,766	+		GFF2059	0.30	-0.7
107,766	+		GFF2059	0.30	-1.1
107,766	+		GFF2059	0.30	-0.9
107,766	+		GFF2059	0.30	+0.4
107,766	+		GFF2059	0.30	+0.1
107,766	+		GFF2059	0.30	-0.1
107,766	+		GFF2059	0.30	-0.0
107,766	+		GFF2059	0.30	-0.6
107,766	+		GFF2059	0.30	-0.5
107,766	+		GFF2059	0.30	-3.3
107,766	+		GFF2059	0.30	+0.8
107,767	-		GFF2059	0.31	+0.1
107,767	-		GFF2059	0.31	-0.6
107,767	-		GFF2059	0.31	-1.3
107,767	-		GFF2059	0.31	-0.2
107,767	-		GFF2059	0.31	+2.1
107,767	-		GFF2059	0.31	+0.6
107,767	-		GFF2059	0.31	+0.1
107,767	-		GFF2059	0.31	-0.8
107,767	-		GFF2059	0.31	-1.6
107,767	-		GFF2059	0.31	-0.1
107,767	-		GFF2059	0.31	-0.0
107,767	-		GFF2059	0.31	-1.0
107,767	-		GFF2059	0.31	+0.3
107,767	-		GFF2059	0.31	-0.5
107,767	-		GFF2059	0.31	-1.1
107,767	-		GFF2059	0.31	-2.0
107,767	-		GFF2059	0.31	-0.8
107,767	-		GFF2059	0.31	+0.9
107,767	-		GFF2059	0.31	-1.1
107,767	-		GFF2059	0.31	-0.9
107,767	-		GFF2059	0.31	+1.9
107,767	-		GFF2059	0.31	-1.0
108,141	+		GFF2059	0.60	+0.5
108,141	+		GFF2059	0.60	-0.5
108,141	+		GFF2059	0.60	+0.1
108,141	+		GFF2059	0.60	+1.0
108,141	+		GFF2059	0.60	-0.8
108,141	+		GFF2059	0.60	-0.5
108,141	+		GFF2059	0.60	+0.2
108,141	+		GFF2059	0.60	+1.2
108,141	+		GFF2059	0.60	+0.4
108,142	-		GFF2059	0.60	+0.5
108,142	-		GFF2059	0.60	+0.0
108,142	-		GFF2059	0.60	+0.0
108,142	-		GFF2059	0.60	-0.0
108,142	-		GFF2059	0.60	-0.2
108,142	-		GFF2059	0.60	-0.1
108,142	-		GFF2059	0.60	+0.9
108,142	-		GFF2059	0.60	-0.6
108,142	-		GFF2059	0.60	+1.6
108,142	-		GFF2059	0.60	-0.1
108,142	-		GFF2059	0.60	-0.9
108,142	-		GFF2059	0.60	-0.9
108,142	-		GFF2059	0.60	-0.9
108,142	-		GFF2059	0.60	-0.5
108,142	-		GFF2059	0.60	-2.3
108,142	-		GFF2059	0.60	-1.3
108,142	-		GFF2059	0.60	+0.4
108,186	+		GFF2059	0.63	-0.1
108,186	+		GFF2059	0.63	+0.3
108,186	+		GFF2059	0.63	+0.7
108,186	+		GFF2059	0.63	-0.5
108,186	+		GFF2059	0.63	+0.6
108,186	+		GFF2059	0.63	+0.3
108,186	+		GFF2059	0.63	+1.0
108,186	+		GFF2059	0.63	-0.2
108,187	-		GFF2059	0.63	-0.0
108,187	-		GFF2059	0.63	-0.5
108,187	-		GFF2059	0.63	+0.5
108,366	+		GFF2059	0.77	+0.1
108,366	+		GFF2059	0.77	-1.3
108,366	+		GFF2059	0.77	-0.6
108,366	+		GFF2059	0.77	+0.3
108,366	+		GFF2059	0.77	-0.1
108,366	+		GFF2059	0.77	+0.1
108,366	+		GFF2059	0.77	-0.5
108,366	+		GFF2059	0.77	+0.1
108,366	+		GFF2059	0.77	-0.8
108,366	+		GFF2059	0.77	-0.4
108,366	+		GFF2059	0.77	-0.2
108,366	+		GFF2059	0.77	-2.6
108,367	-		GFF2059	0.77	-1.5
108,367	-		GFF2059	0.77	+0.9
108,367	-		GFF2059	0.77	+1.3
108,367	-		GFF2059	0.77	-0.1
108,367	-		GFF2059	0.77	-1.6
108,367	-		GFF2059	0.77	-1.3
108,367	-		GFF2059	0.77	-0.4
108,367	-		GFF2059	0.77	+0.1
108,367	-		GFF2059	0.77	-0.4
108,367	-		GFF2059	0.77	+0.3
108,474	+		GFF2059	0.86	-0.1
108,474	+		GFF2059	0.86	+0.1
108,475	-		GFF2059	0.86	+0.2
108,475	-		GFF2059	0.86	+0.5
108,489	+		GFF2059	0.87	-0.9
108,489	+		GFF2059	0.87	-0.7
108,489	+		GFF2059	0.87	+0.3
108,489	+		GFF2059	0.87	-0.2
108,489	+		GFF2059	0.87	+1.3
108,489	+		GFF2059	0.87	-0.0
108,489	+		GFF2059	0.87	-0.0
108,489	+		GFF2059	0.87	-0.1
108,489	+		GFF2059	0.87	+0.1
108,489	+		GFF2059	0.87	+1.1
108,489	+		GFF2059	0.87	-1.5
108,489	+		GFF2059	0.87	-0.3
108,489	+		GFF2059	0.87	+0.3
108,489	+		GFF2059	0.87	+0.7
108,489	+		GFF2059	0.87	-0.8
108,489	+		GFF2059	0.87	-0.5
108,489	+		GFF2059	0.87	-0.1
108,489	+		GFF2059	0.87	-0.6
108,489	+		GFF2059	0.87	-0.7
108,489	+		GFF2059	0.87	+1.6
108,489	+		GFF2059	0.87	-0.4
108,489	+		GFF2059	0.87	+0.2
108,489	+		GFF2059	0.87	-0.6
108,489	+		GFF2059	0.87	+0.2
108,489	+		GFF2059	0.87	+0.3
108,489	+		GFF2059	0.87	-0.4
108,489	+		GFF2059	0.87	+1.1
108,489	+		GFF2059	0.87	-0.5
108,489	+		GFF2059	0.87	-0.9
108,489	+		GFF2059	0.87	+2.4
108,489	+		GFF2059	0.87	-0.6
108,489	+		GFF2059	0.87	-0.9
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	+0.3
108,490	-		GFF2059	0.87	-0.3
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	+0.6
108,490	-		GFF2059	0.87	+0.6
108,490	-		GFF2059	0.87	-0.8
108,490	-		GFF2059	0.87	-0.9
108,490	-		GFF2059	0.87	-0.5
108,490	-		GFF2059	0.87	-1.0
108,490	-		GFF2059	0.87	+0.1
108,490	-		GFF2059	0.87	-0.4
108,490	-		GFF2059	0.87	-0.5
108,490	-		GFF2059	0.87	-0.1
108,490	-		GFF2059	0.87	-1.6
108,490	-		GFF2059	0.87	+1.2
108,490	-		GFF2059	0.87	+0.2
108,490	-		GFF2059	0.87	-0.2
108,490	-		GFF2059	0.87	+1.2
108,490	-		GFF2059	0.87	-0.9
108,490	-		GFF2059	0.87	-0.0
108,490	-		GFF2059	0.87	+0.7
108,490	-		GFF2059	0.87	+0.4
108,490	-		GFF2059	0.87	-1.3
108,490	-		GFF2059	0.87	+1.0
108,490	-		GFF2059	0.87	-0.7
108,490	-		GFF2059	0.87	+0.4
108,490	-		GFF2059	0.87	+0.0
108,490	-		GFF2059	0.87	-0.0
108,490	-		GFF2059	0.87	+0.3
108,490	-		GFF2059	0.87	+0.4
108,490	-		GFF2059	0.87	-0.3
108,490	-		GFF2059	0.87	-0.6
108,490	-		GFF2059	0.87	-0.5
108,490	-		GFF2059	0.87	+0.6
108,490	-		GFF2059	0.87	+1.2
108,501	+		GFF2059	0.88	-0.1
108,501	+		GFF2059	0.88	-0.6
108,501	+		GFF2059	0.88	-0.7
108,501	+		GFF2059	0.88	-0.9
108,501	+		GFF2059	0.88	-0.1
108,502	-		GFF2059	0.88	-0.8
108,502	-		GFF2059	0.88	-0.2
108,502	-		GFF2059	0.88	-1.6
108,502	-		GFF2059	0.88	+0.9
108,502	-		GFF2059	0.88	-0.1
108,502	-		GFF2059	0.88	+0.2
108,502	-		GFF2059	0.88	+0.1
108,502	-		GFF2059	0.88	-0.0
108,502	-		GFF2059	0.88	+0.3
108,552	+				-0.7
108,552	+				-1.7
108,552	+				-1.1
108,552	+				-0.9
108,552	+				-0.3
108,552	+				-1.6
108,552	+				-2.6
108,552	+				-1.5
108,552	+				-0.1
108,553	-				+0.2
108,553	-				+0.1
108,553	-				+0.3
108,553	-				-1.1
108,553	-				-0.7
108,553	-				-0.5
108,553	-				+0.5
108,553	-				+0.5
108,553	-				+1.6
108,701	+				-0.9
108,701	+				-1.9
108,701	+				-0.3
108,701	+				-0.4
108,701	+				-0.5
108,701	+				+0.0
108,702	-				-0.5
108,702	-				+0.8
108,702	-				-0.0
108,702	-				-0.5
108,702	-				-0.7
108,702	-				-1.2
109,614	+		GFF2061	0.86	-0.6