Strain Fitness in Variovorax sp. SCN45 around GFF1966

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
7,268	+				+2.9
7,269	-				+0.2
7,269	-				+0.3
7,269	-				-0.6
7,285	+				-1.6
7,285	+				-0.7
7,286	-				+0.1
7,286	-				+0.6
7,286	-				+0.5
7,286	-				-0.8
7,663	+		GFF1965	0.36	+1.0
7,663	+		GFF1965	0.36	+0.6
7,664	-		GFF1965	0.36	-0.1
7,664	-		GFF1965	0.36	+1.0
7,664	-		GFF1965	0.36	-0.3
7,664	-		GFF1965	0.36	-0.7
7,664	-		GFF1965	0.36	-1.4
7,664	-		GFF1965	0.36	+0.3
7,664	-		GFF1965	0.36	-0.7
7,664	-		GFF1965	0.36	+0.8
7,664	-		GFF1965	0.36	-1.1
7,664	-		GFF1965	0.36	-0.3
7,978	+		GFF1965	0.72	-1.1
7,978	+		GFF1965	0.72	-0.5
7,978	+		GFF1965	0.72	+0.5
7,978	+		GFF1965	0.72	+1.0
7,978	+		GFF1965	0.72	-0.9
7,979	-		GFF1965	0.72	+0.6
7,979	-		GFF1965	0.72	-1.6
7,979	-		GFF1965	0.72	-1.2
7,979	-		GFF1965	0.72	-0.8
7,979	-		GFF1965	0.72	+0.9
7,979	-		GFF1965	0.72	+1.4
7,979	-		GFF1965	0.72	-0.5
7,979	-		GFF1965	0.72	-0.5
7,979	-		GFF1965	0.72	+0.2
7,979	-		GFF1965	0.72	+0.5
7,979	-		GFF1965	0.72	-0.0
7,979	-		GFF1965	0.72	+0.5
8,348	-				-3.2
8,499	+		GFF1966	0.17	-2.5
8,499	+		GFF1966	0.17	-1.5
8,499	+		GFF1966	0.17	-0.2
8,500	-		GFF1966	0.17	-0.5
8,500	-		GFF1966	0.17	-0.7
8,500	-		GFF1966	0.17	-1.5
8,500	-		GFF1966	0.17	-2.7
8,500	-		GFF1966	0.17	-0.9
8,565	+		GFF1966	0.22	-1.5
8,565	+		GFF1966	0.22	-3.0
8,565	+		GFF1966	0.22	-0.6
8,565	+		GFF1966	0.22	-1.0
8,565	+		GFF1966	0.22	-0.8
8,565	+		GFF1966	0.22	-1.1
8,565	+		GFF1966	0.22	-0.8
8,565	+		GFF1966	0.22	-2.0
8,566	-		GFF1966	0.22	-0.1
8,566	-		GFF1966	0.22	-2.8
8,566	-		GFF1966	0.22	+0.1
8,566	-		GFF1966	0.22	-0.0
8,568	+		GFF1966	0.22	-0.7
8,568	+		GFF1966	0.22	-2.1
8,568	+		GFF1966	0.22	-0.2
8,568	+		GFF1966	0.22	-0.3
8,568	+		GFF1966	0.22	-0.7
8,568	+		GFF1966	0.22	-0.5
8,569	-		GFF1966	0.22	-1.2
8,569	-		GFF1966	0.22	-3.0
8,569	-		GFF1966	0.22	-1.2
8,569	-		GFF1966	0.22	-0.7
8,569	-		GFF1966	0.22	-1.1
8,709	+		GFF1966	0.31	+0.2
8,709	+		GFF1966	0.31	-0.5
8,760	+		GFF1966	0.34	-2.5
8,761	-		GFF1966	0.34	-0.5
9,132	+		GFF1966	0.58	-2.0
9,133	-		GFF1966	0.58	-1.3
9,133	-		GFF1966	0.58	-2.3
9,133	-		GFF1966	0.58	+0.5
9,133	-		GFF1966	0.58	+0.5
9,189	+		GFF1966	0.61	-3.0
9,189	+		GFF1966	0.61	-1.5
9,189	+		GFF1966	0.61	+0.9
9,189	+		GFF1966	0.61	+1.5
9,189	+		GFF1966	0.61	+1.0
9,189	+		GFF1966	0.61	-2.7
9,190	-		GFF1966	0.61	+0.7
9,190	-		GFF1966	0.61	-2.5
9,190	-		GFF1966	0.61	+0.1
9,190	-		GFF1966	0.61	-0.5
9,190	-		GFF1966	0.61	-3.2
9,234	+		GFF1966	0.64	-0.7
9,234	+		GFF1966	0.64	+0.3
9,234	+		GFF1966	0.64	-1.8
9,234	+		GFF1966	0.64	-2.3
9,234	+		GFF1966	0.64	-3.2
9,241	-		GFF1966	0.64	-2.7
9,241	-		GFF1966	0.64	-1.5
9,400	-		GFF1966	0.75	-0.8
9,693	+				-1.4
9,694	-				-1.9
9,694	-				+0.3
10,171	+		GFF1967	0.27	-0.5
10,171	+		GFF1967	0.27	-0.5
10,171	+		GFF1967	0.27	+0.2
10,171	+		GFF1967	0.27	-2.2
10,171	+		GFF1967	0.27	+1.6
10,172	-		GFF1967	0.27	-0.1
10,172	-		GFF1967	0.27	+1.3
10,690	+		GFF1967	0.64	-0.2
10,691	-		GFF1967	0.64	+0.3
10,691	-		GFF1967	0.64	-0.5
10,753	+		GFF1967	0.69	-0.3