Strain Fitness in Variovorax sp. SCN45 around GFF1689

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1688 and GFF1689 are separated by 39 nucleotidesGFF1689 and GFF1690 are separated by 21 nucleotidesGFF1690 and GFF1691 are separated by 101 nucleotides GFF1688 - FIG00828468: hypothetical protein, at 332,813 to 334,240 GFF1688 GFF1689 - BUG/TctC family periplasmic protein, at 334,280 to 335,272 GFF1689 GFF1690 - KEGG: DNA-binding protein H-NS, at 335,294 to 335,647 GFF1690 GFF1691 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 335,749 to 337,110 GFF1691 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1at 333.434 kb on + strand, within GFF1688at 333.488 kb on + strand, within GFF1688at 333.489 kb on - strand, within GFF1688at 333.515 kb on + strand, within GFF1688at 333.515 kb on + strand, within GFF1688at 333.656 kb on + strand, within GFF1688at 333.774 kb on - strand, within GFF1688at 333.839 kb on + strand, within GFF1688at 333.839 kb on + strand, within GFF1688at 333.839 kb on + strand, within GFF1688at 334.101 kb on - strandat 334.101 kb on - strandat 334.538 kb on + strand, within GFF1689at 334.565 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.567 kb on + strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.568 kb on - strand, within GFF1689at 334.628 kb on + strand, within GFF1689at 334.828 kb on - strand, within GFF1689at 334.847 kb on + strand, within GFF1689at 334.847 kb on + strand, within GFF1689at 334.847 kb on + strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 334.848 kb on - strand, within GFF1689at 335.271 kb on - strandat 335.271 kb on - strandat 335.295 kb on + strandat 335.296 kb on - strandat 335.523 kb on + strand, within GFF1690at 335.533 kb on + strand, within GFF1690at 335.534 kb on - strand, within GFF1690at 335.631 kb on + strandat 335.631 kb on + strandat 335.671 kb on - strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.686 kb on + strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.687 kb on - strandat 335.750 kb on + strandat 336.035 kb on + strand, within GFF1691at 336.035 kb on + strand, within GFF1691at 336.035 kb on + strand, within GFF1691at 336.035 kb on + strand, within GFF1691at 336.035 kb on + strand, within GFF1691at 336.036 kb on - strand, within GFF1691at 336.036 kb on - strand, within GFF1691at 336.036 kb on - strand, within GFF1691at 336.036 kb on - strand, within GFF1691at 336.090 kb on - strand, within GFF1691at 336.191 kb on + strand, within GFF1691at 336.192 kb on - strand, within GFF1691at 336.194 kb on + strand, within GFF1691at 336.194 kb on + strand, within GFF1691at 336.194 kb on + strand, within GFF1691at 336.194 kb on + strand, within GFF1691at 336.194 kb on + strand, within GFF1691at 336.195 kb on - strand, within GFF1691at 336.195 kb on - strand, within GFF1691at 336.195 kb on - strand, within GFF1691at 336.195 kb on - strand, within GFF1691at 336.195 kb on - strand, within GFF1691

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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333,434 + GFF1688 0.43 +0.7
333,488 + GFF1688 0.47 +0.1
333,489 - GFF1688 0.47 +1.0
333,515 + GFF1688 0.49 -0.8
333,515 + GFF1688 0.49 -0.2
333,656 + GFF1688 0.59 +0.5
333,774 - GFF1688 0.67 +0.0
333,839 + GFF1688 0.72 -1.8
333,839 + GFF1688 0.72 +0.4
333,839 + GFF1688 0.72 +0.3
334,101 - +0.5
334,101 - -1.8
334,538 + GFF1689 0.26 +0.9
334,565 + GFF1689 0.29 -1.0
334,567 + GFF1689 0.29 +1.6
334,567 + GFF1689 0.29 +1.0
334,567 + GFF1689 0.29 +1.6
334,567 + GFF1689 0.29 +0.6
334,567 + GFF1689 0.29 -0.3
334,567 + GFF1689 0.29 -0.4
334,567 + GFF1689 0.29 +0.4
334,567 + GFF1689 0.29 +1.1
334,567 + GFF1689 0.29 -2.1
334,567 + GFF1689 0.29 -0.1
334,567 + GFF1689 0.29 -1.6
334,567 + GFF1689 0.29 +0.8
334,567 + GFF1689 0.29 -0.5
334,567 + GFF1689 0.29 -0.3
334,567 + GFF1689 0.29 -0.3
334,567 + GFF1689 0.29 -0.0
334,567 + GFF1689 0.29 -0.7
334,567 + GFF1689 0.29 -1.3
334,567 + GFF1689 0.29 +0.3
334,567 + GFF1689 0.29 -0.3
334,567 + GFF1689 0.29 +0.3
334,568 - GFF1689 0.29 +1.0
334,568 - GFF1689 0.29 -0.3
334,568 - GFF1689 0.29 +0.3
334,568 - GFF1689 0.29 +0.3
334,568 - GFF1689 0.29 -0.6
334,568 - GFF1689 0.29 +1.2
334,568 - GFF1689 0.29 -0.8
334,568 - GFF1689 0.29 +1.1
334,568 - GFF1689 0.29 +0.5
334,568 - GFF1689 0.29 +0.3
334,568 - GFF1689 0.29 -1.6
334,568 - GFF1689 0.29 -0.3
334,568 - GFF1689 0.29 +0.9
334,568 - GFF1689 0.29 +0.5
334,568 - GFF1689 0.29 -1.2
334,568 - GFF1689 0.29 -0.5
334,568 - GFF1689 0.29 -0.3
334,568 - GFF1689 0.29 -0.1
334,568 - GFF1689 0.29 +0.0
334,568 - GFF1689 0.29 -0.3
334,568 - GFF1689 0.29 -2.0
334,568 - GFF1689 0.29 +0.7
334,568 - GFF1689 0.29 +0.1
334,568 - GFF1689 0.29 +1.2
334,628 + GFF1689 0.35 +0.2
334,828 - GFF1689 0.55 -0.6
334,847 + GFF1689 0.57 -0.3
334,847 + GFF1689 0.57 +0.0
334,847 + GFF1689 0.57 +0.6
334,848 - GFF1689 0.57 +0.4
334,848 - GFF1689 0.57 +0.9
334,848 - GFF1689 0.57 +0.6
334,848 - GFF1689 0.57 +0.3
334,848 - GFF1689 0.57 +0.7
334,848 - GFF1689 0.57 -0.1
335,271 - -0.4
335,271 - -0.2
335,295 + -2.1
335,296 - -2.6
335,523 + GFF1690 0.65 -0.1
335,533 + GFF1690 0.68 -0.2
335,534 - GFF1690 0.68 +0.8
335,631 + +1.1
335,631 + -1.2
335,671 - +0.3
335,686 + -0.7
335,686 + +0.0
335,686 + -0.2
335,686 + +0.3
335,686 + +0.0
335,686 + +0.1
335,686 + -0.7
335,686 + +0.8
335,686 + +0.8
335,686 + -1.3
335,686 + -0.4
335,687 - +0.0
335,687 - +0.3
335,687 - -1.0
335,687 - -1.5
335,687 - -0.4
335,687 - +0.5
335,687 - +0.8
335,750 + -0.3
336,035 + GFF1691 0.21 -2.0
336,035 + GFF1691 0.21 +0.8
336,035 + GFF1691 0.21 +0.1
336,035 + GFF1691 0.21 -0.0
336,035 + GFF1691 0.21 -0.2
336,036 - GFF1691 0.21 -0.0
336,036 - GFF1691 0.21 -1.2
336,036 - GFF1691 0.21 +0.4
336,036 - GFF1691 0.21 -0.1
336,090 - GFF1691 0.25 +0.3
336,191 + GFF1691 0.32 -0.2
336,192 - GFF1691 0.33 -0.7
336,194 + GFF1691 0.33 +0.8
336,194 + GFF1691 0.33 +1.0
336,194 + GFF1691 0.33 -0.3
336,194 + GFF1691 0.33 +1.3
336,194 + GFF1691 0.33 +0.2
336,195 - GFF1691 0.33 -1.5
336,195 - GFF1691 0.33 -1.0
336,195 - GFF1691 0.33 +0.0
336,195 - GFF1691 0.33 -1.7
336,195 - GFF1691 0.33 -2.7

Or see this region's nucleotide sequence